Chemistry and Life Sciences Resources Developed by Indiana University Personnel and Students

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SIRCh: Selected Internet Resources for Chemistry

  • PubChemSR (Search and Retrieve) Tool (Junguk Hur; download zip file from the Tools section, 452 KB)
  • Beilstein Lawson Number Translator (Allison Tipton)
  • Beilstein Organic Compound Classes (Gary Wiggins)
  • Chemical Information Sources Wiki (Gary Wiggins and Yan He)
  • SIRCh: Selected Internet Resources for Chemistry Wiki (Gary Wiggins)
  • CCIIM: Clearinghouse for Chemical Information Instructional Materials
  • Reciprocal Net; a distributed crystallography network for researchers, students, and the general public (John C. Huffman et al.)
  • CATPA: Curation and Alignment Tool for Protein Analysis (Mehmet Dalkilic)
  • PLATCOM: Platform for Computational Comparative Genomics] (Sun Kim)
  • ComPath: Comparative Pathway Workbench built on KEGG and PLATCOM (Sun Kim)
  • euGenes; Genomic Information for Eukaryotic Organisms (Don Gilbert)
  • MutDB; annotation of human variation data with protein structural information and other functionally relevant information (Sean Mooney)
  • Chimera Client for CICC Services (Randy Heiland)
  • Cytochrome P450 Drug Interaction table (Indiana University - Purdue University - Indianapolis)
  • ENABLE: Extensible Networked Association-based Bioinformatics Learning Environment (Javed Mostafa, LAIR, IU School of Library and Information Science)

Systems Biology Portal (Peter Ortoleva, Center for Cell and Virus Theory)

  • Cell Modeling - a suite of cell simulators:
    • Karyote, a set of modules for building and simulating ordinary differential equation models of single and arrays of compartmented cells
    • CellX, a database and platform for cooperative research on a particular cell type
    • Roulette, a stochastic transcription, translation, post-translation simulator.
  • Network Discovery
    • TRND: Transcriptional Regulatory Network Discovery, an integrated workflow wherein user-supplied gene expression data generates transcriptional regulatory networks and derives their biological implications
    • TRND Demo movie - a 15 minute overview of how to use the site
    • TRND Result, an interactive database of TRND-predicted networks.
  • Virus/Nanoparticle Modeling
  • SIBIOS, System for the Integration of BIOinformatics Services (Malika Mahoui)
  • BioMAP, BioMedical Associations and Pathways (Mathew J. Palakal)
  • BioFitWeb (Santiago Schnell) tools for estimation of parameters of enzyme catalytic properties from initial rate or time-course experimental data
  • Drug Interations (David Flockhart)
  • Zhou Lab Services (Yaoqi Zhou)
    • SPEM (Prediction/analysis tools for sequences)
    • TUPS (Prediction/analysis tools for secondary structures)
    • SPINE (Structural properties of proteins by integrated neural networks)
    • SPARKS, SCUD, DDOMAIN (Prediction/analysis tools for tertiary structures)
    • DFIRE (Prediction analysis tools for interactions)
    • DOGMA (Prediction/analysis tools for network graph)
    • Prediction/analysis tools for folding kinetics


This page was originally created by Gary Wiggins. If you have a legitimate desire to contribute to its contents, please request an account from the sysop, Dr. David J. Wild, by e-mailing him at djwild @ indiana.edu

Retrieved from "http://cheminfo.informatics.indiana.edu/cicc/cis/index.php/Chemistry_and_Life_Sciences_Resources_Developed_by_Indiana_University_Personnel_and_Students"
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