| Files | Total | Priority 1 | Priority 2 | Priority 3 | Priority 4 | Priority 5 |
|---|---|---|---|---|---|---|
| 23 | 481 | 19 |
1 |
458 |
3 |
0 |
| Prio | File | Line | Description |
|---|---|---|---|
3 |
org.openscience.cdk.charges.MMFF94PartialCharges | 73 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.charges.MMFF94PartialCharges | 73 | Avoid variables with short names like ac |
3 |
org.openscience.cdk.charges.MMFF94PartialCharges | 106 | The String literal "bond" appears 4 times in this file; the first occurrence is on line 106 |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 65-759 | The class 'ForceFieldConfigurator' has a Cyclomatic Complexity of 9 (Highest = 88). |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 67 | The String literal "mmff94" appears 4 times in this file; the first occurrence is on line 67 |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 128-129 | Avoid empty if statements |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 196 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 227 | Avoid variables with short names like ID |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 228 | Avoid variables with short names like at |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 245 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 245-323 | The method 'assignAtomTyps' has a Cyclomatic Complexity of 13. |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 245-323 | The method assignAtomTyps() has an NPath complexity of 340 |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 269 | The String literal "RING_SIZE" appears 30 times in this file; the first occurrence is on line 269 |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 304 | The String literal "Csp2" appears 5 times in this file; the first occurrence is on line 304 |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 313 | The String literal "Csp" appears 4 times in this file; the first occurrence is on line 313 |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 332 | Avoid variables with short names like ac |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 351 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 351 | Avoid variables with short names like ID |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 352 | Avoid variables with short names like at |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 385 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 402 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 402-540 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 402-540 | The method 'configureMM2BasedAtom' has a Cyclomatic Complexity of 34. |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 408 | Avoid variables with short names like p |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 409 | Avoid variables with short names like ID |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 447-448 | Avoid empty if statements |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 476-478 | These nested if statements could be combined |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 489-491 | These nested if statements could be combined |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 560 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 560-758 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 560-758 | The method 'configureMMFF94BasedAtom' has a Cyclomatic Complexity of 88. |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 560-758 | The method configureMMFF94BasedAtom() has an NCSS line count of 158 |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 560-758 | The method configureMMFF94BasedAtom() has an NPath complexity of 1660 |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 565 | Avoid variables with short names like p |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 566 | Avoid variables with short names like p2 |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 567 | Avoid variables with short names like ID |
3 |
org.openscience.cdk.modeling.builder3d.ForceFieldConfigurator | 621-623 | These nested if statements could be combined |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedAtomTypePattern | 66-218 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedAtomTypePattern | 177 | The String literal "NotImplemented" appears 5 times in this file; the first occurrence is on line 177 |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 56-897 | The class 'MM2BasedParameterSetReader' has a Cyclomatic Complexity of 4 (Highest = 34). |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 64 | Avoid variables with short names like st |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 96 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 96-258 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 96-258 | The method 'setForceFieldDefinitions' has a Cyclomatic Complexity of 34. |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 96-258 | The method setForceFieldDefinitions() has an NCSS line count of 119 |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 105 | The String literal "VdWaalsTable.ReadvdWaals: " appears 15 times in this file; the first occurrence is on line 105 |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 106 | The String literal "Malformed Number" appears 20 times in this file; the first occurrence is on line 106 |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 256-257 | Avoid empty if statements |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 265 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 268 | Avoid variables with short names like an |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 269 | Avoid variables with short names like rl |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 270 | Avoid variables with short names like gl |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 271 | Avoid variables with short names like bl |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 298 | Avoid variables with short names like co |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 309 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 335 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 360 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 386 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 412 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 438 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 461 | Consider replacing this Vector with the newer java.util.List |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 480 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 513 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 546 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 567 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 580 | Consider replacing this Vector with the newer java.util.List |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 596 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 623 | Consider replacing this Vector with the newer java.util.List |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 640 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 677 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 698 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 725 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 752 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 781 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 808 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 808-896 | The method 'readParameterSets' has a Cyclomatic Complexity of 25. |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 822 | Avoid variables with short names like r |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 823 | Avoid variables with short names like s |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 824 | Avoid variables with short names like a |
3 |
org.openscience.cdk.modeling.builder3d.MM2BasedParameterSetReader | 832 | Avoid variables with short names like nt |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedAtomTypePattern | 67-263 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 56-568 | The class 'MMFF94BasedParameterSetReader' has a Cyclomatic Complexity of 4 (Highest = 25). |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 62 | Avoid variables with short names like st |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 104 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 122 | Avoid variables with short names like sA |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 123 | Avoid variables with short names like sG |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 131 | Avoid variables with short names like a |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 132 | Avoid variables with short names like g |
2 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 137 | Avoid instantiating String objects; this is usually unnecessary. |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 156-158 | Avoid empty catch blocks |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 164 | Avoid variables with short names like q0 |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 177 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 181 | Avoid variables with short names like rl |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 182 | Avoid variables with short names like gl |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 183 | Avoid variables with short names like bl |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 212 | Avoid variables with short names like co |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 224 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 238 | Avoid variables with short names like k2 |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 239 | Avoid variables with short names like k3 |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 240 | Avoid variables with short names like k4 |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 260 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 285 | Consider replacing this Vector with the newer java.util.List |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 304 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 334 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 358 | Consider replacing this Vector with the newer java.util.List |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 388 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 402 | Consider replacing this Vector with the newer java.util.List |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 418 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 447 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 447-566 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 447-566 | The method 'readParameterSets' has a Cyclomatic Complexity of 25. |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 447-566 | The method readParameterSets() has an NPath complexity of 11520 |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 460 | Avoid variables with short names like r |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 461 | Avoid variables with short names like s |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 462 | Avoid variables with short names like a |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94BasedParameterSetReader | 493 | Avoid variables with short names like nt |
4 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 5 | Avoid unused imports such as 'java.util.Vector' |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 45 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 47 | The String literal "bond" appears 4 times in this file; the first occurrence is on line 47 |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 69 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 71 | The String literal "angle" appears 4 times in this file; the first occurrence is on line 71 |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 93 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 95 | The String literal "strbnd" appears 12 times in this file; the first occurrence is on line 95 |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 125 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 125 | Avoid variables with short names like iR |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 125 | Avoid variables with short names like jR |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 125 | Avoid variables with short names like kR |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 145 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 147 | The String literal "torsion" appears 12 times in this file; the first occurrence is on line 147 |
3 |
org.openscience.cdk.modeling.builder3d.MMFF94ParametersCall | 151 | The String literal ";*;" appears 8 times in this file; the first occurrence is on line 151 |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 26-1119 | Avoid really long classes. |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 26-1119 | The class 'AngleBending' has a Cyclomatic Complexity of 4 (Highest = 30). |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 26-1119 | Too many fields |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 32 | Avoid excessively long variable names like order2ndErrorApproximateGradientMMFF94SumEA |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 33 | Avoid excessively long variable names like order5thErrorApproximateGradientMMFF94SumEA |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 36 | Avoid excessively long variable names like order2ndErrorApproximateHessianMMFF94SumEA |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 37 | Avoid excessively long variable names like forOrder2ndErrorApproximateHessian |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 40 | Avoid excessively long variable names like angleBendingOrder2ndErrorApproximateGradient |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 42 | Avoid excessively long variable names like angleBendingOrder2ndErrorApproximateHessian |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 47 | Avoid variables with short names like v0 |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 48 | Avoid variables with short names like k2 |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 49 | Avoid variables with short names like k3 |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 50 | Avoid variables with short names like k4 |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 51 | Avoid variables with short names like cb |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 54 | Avoid variables with short names like v |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 57 | It is somewhat confusing to have a field name matching the declaring class name |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 84 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 84-177 | The method 'setMMFF94AngleBendingParameters' has a Cyclomatic Complexity of 13. |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 103 | Avoid variables with short names like pc |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 118 | Avoid variables with short names like l |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 134 | Use equals() to compare strings instead of '==' or '!=' |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 134 | Use equals() to compare strings instead of '==' or '!=' |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 137 | Use equals() to compare strings instead of '==' or '!=' |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 137 | Use equals() to compare strings instead of '==' or '!=' |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 278-365 | The method 'setAngleBendingFirstDerivative' has a Cyclomatic Complexity of 16. |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 301 | Avoid variables with short names like xi |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 303 | Avoid variables with short names like xj |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 305 | Avoid variables with short names like xk |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 551-954 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 551-954 | The method 'setAngleBendingSecondDerivative' has a Cyclomatic Complexity of 30. |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 551-954 | The method setAngleBendingSecondDerivative() has an NCSS line count of 345 |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 551-954 | The method setAngleBendingSecondDerivative() has an NPath complexity of 4101 |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 619 | Avoid variables with short names like xi |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 621 | Avoid variables with short names like xj |
3 |
org.openscience.cdk.modeling.forcefield.AngleBending | 623 | Avoid variables with short names like xk |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 23-510 | The class 'BondStretching' has a Cyclomatic Complexity of 3 (Highest = 19). |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 23-510 | Too many fields |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 32 | Avoid excessively long variable names like order2ndErrorApproximateHessianMMFF94SumEB |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 33 | Avoid excessively long variable names like forOrder2ndErrorApproximateHessian |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 38 | Avoid variables with short names like r0 |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 39 | Avoid variables with short names like k2 |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 40 | Avoid variables with short names like k3 |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 41 | Avoid variables with short names like k4 |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 42 | Avoid variables with short names like cs |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 44 | Avoid variables with short names like r |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 69 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 78 | Avoid variables with short names like pc |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 88 | Avoid variables with short names like i |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 285-398 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 285-398 | The method 'setBondLengthsSecondDerivative' has a Cyclomatic Complexity of 19. |
3 |
org.openscience.cdk.modeling.forcefield.BondStretching | 285-398 | The method setBondLengthsSecondDerivative() has an NPath complexity of 1162 |
1 |
org.openscience.cdk.modeling.forcefield.ConjugateGradientMethod | 17 | Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix). |
1 |
org.openscience.cdk.modeling.forcefield.ConjugateGradientMethod | 18 | Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix). |
3 |
org.openscience.cdk.modeling.forcefield.ConjugateGradientMethod | 20 | Avoid excessively long variable names like previousConjugatedGradientDirection |
3 |
org.openscience.cdk.modeling.forcefield.ConjugateGradientMethod | 54 | Avoid variables with short names like gk |
1 |
org.openscience.cdk.modeling.forcefield.ConjugateGradientMethod | 54 | Method names should not contain underscores |
3 |
org.openscience.cdk.modeling.forcefield.ConjugateGradientMethod | 58 | Avoid unnecessary return statements |
3 |
org.openscience.cdk.modeling.forcefield.ConjugateGradientMethod | 66 | Avoid variables with short names like gk |
1 |
org.openscience.cdk.modeling.forcefield.ConjugateGradientMethod | 66 | Method names should not contain underscores |
3 |
org.openscience.cdk.modeling.forcefield.ConjugateGradientMethod | 70-72 | Avoid empty if statements |
3 |
org.openscience.cdk.modeling.forcefield.ConjugateGradientMethod | 73 | Avoid unnecessary return statements |
3 |
org.openscience.cdk.modeling.forcefield.ConjugateGradientMethod | 83 | Avoid variables with short names like pk |
3 |
org.openscience.cdk.modeling.forcefield.ConjugateGradientMethod | 98 | Avoid variables with short names like gk |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 22-523 | The class 'ElectrostaticInteractions' has a Cyclomatic Complexity of 4 (Highest = 18). |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 22-523 | Too many fields |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 28 | Avoid excessively long variable names like order2ndErrorApproximateGradientMMFF94SumEQ |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 29 | Avoid excessively long variable names like order5thErrorApproximateGradientMMFF94SumEQ |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 33 | Avoid variables with short names like dR |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 40 | Avoid excessively long variable names like electrostaticInteractionAtomPosition |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 42 | Avoid variables with short names like r |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 43 | Avoid variables with short names like qi |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 44 | Avoid variables with short names like qj |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 47 | Avoid variables with short names like n |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 48 | Avoid variables with short names like D |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 48 | The field name indicates a constant but its modifiers do not |
1 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 48 | Variables should start with a lowercase character |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 50 | Avoid variables with short names like iQ |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 51 | Avoid excessively long variable names like electrostatic14interactionsScale |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 71 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 102 | Avoid variables with short names like l |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 352-460 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 352-460 | The method 'setInternuclearSeparationSecondDerivative' has a Cyclomatic Complexity of 18. |
3 |
org.openscience.cdk.modeling.forcefield.ElectrostaticInteractions | 352-460 | The method setInternuclearSeparationSecondDerivative() has an NPath complexity of 581 |
1 |
org.openscience.cdk.modeling.forcefield.ForceField | 21 | Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix). |
1 |
org.openscience.cdk.modeling.forcefield.ForceField | 22 | Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix). |
1 |
org.openscience.cdk.modeling.forcefield.ForceField | 23 | Variables that are not final should not contain underscores (except for underscores in standard prefix/suffix). |
3 |
org.openscience.cdk.modeling.forcefield.ForceField | 35 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.forcefield.ForceField | 51 | A method/constructor shouldn't explicitly throw java.lang.Exception |
1 |
org.openscience.cdk.modeling.forcefield.ForceField | 53 | Avoid throwing raw exception types. |
4 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 9 | Avoid unused imports such as 'java.util.Hashtable' |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 24-632 | Too many fields |
1 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 27 | Variables should start with a lowercase character |
1 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 28 | Variables should start with a lowercase character |
1 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 29 | Variables should start with a lowercase character |
1 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 31 | Variables should start with a lowercase character |
1 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 32 | Variables should start with a lowercase character |
1 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 33 | Variables should start with a lowercase character |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 37 | Avoid variables with short names like g0 |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 55 | The field name indicates a constant but its modifiers do not |
1 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 55 | Variables should start with a lowercase character |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 56 | The field name indicates a constant but its modifiers do not |
1 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 56 | Variables should start with a lowercase character |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 57 | Avoid variables with short names like d |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 75 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 94 | A method/constructor shouldn't explicitly throw java.lang.Exception |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 232 | Avoid unnecessary return statements |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 253-369 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 265 | Avoid variables with short names like sk |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 281 | Avoid variables with short names like ls |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 368 | Avoid unnecessary return statements |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 399-528 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 422 | Avoid variables with short names like ls |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 485 | Avoid empty if statements |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 490 | Avoid empty if statements |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 491-495 | Avoid empty if statements |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 527 | Avoid unnecessary return statements |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 560 | Avoid unnecessary return statements |
3 |
org.openscience.cdk.modeling.forcefield.GeometricMinimizer | 619 | Avoid unnecessary return statements |
1 |
org.openscience.cdk.modeling.forcefield.IPotentialFunction | 18 | Variables that are final and static should be in all caps. |
1 |
org.openscience.cdk.modeling.forcefield.IPotentialFunction | 22 | Variables that are final and static should be in all caps. |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 18-698 | The class 'LineSearch' has a Cyclomatic Complexity of 6 (Highest = 16). |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 18-698 | Too many fields |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 20 | Avoid variables with short names like pf |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 22 | Avoid variables with short names like x |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 53-240 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 53-240 | The method 'bracketingTheMinimum' has a Cyclomatic Complexity of 10. |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 62 | Avoid empty if statements |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 239 | Avoid unnecessary return statements |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 248-428 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 248-428 | The method 'brentsMethod' has a Cyclomatic Complexity of 16. |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 248-428 | The method brentsMethod() has an NPath complexity of 323 |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 255 | Avoid variables with short names like a |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 255 | Avoid variables with short names like b |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 255 | Avoid variables with short names like d |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 256 | Avoid variables with short names like fu |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 256 | Avoid variables with short names like fv |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 256 | Avoid variables with short names like fw |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 256 | Avoid variables with short names like fx |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 257 | Avoid variables with short names like p |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 257 | Avoid variables with short names like q |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 257 | Avoid variables with short names like r |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 257 | Avoid variables with short names like u |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 257 | Avoid variables with short names like v |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 257 | Avoid variables with short names like w |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 257 | Avoid variables with short names like x |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 257 | Avoid variables with short names like xm |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 258 | Avoid variables with short names like e |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 437-617 | Avoid really long methods. |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 437-617 | The method 'dbrentsMethod' has a Cyclomatic Complexity of 16. |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 437-617 | The method dbrentsMethod() has an NPath complexity of 323 |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 444 | Avoid variables with short names like a |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 444 | Avoid variables with short names like b |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 444 | Avoid variables with short names like d |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 445 | Avoid variables with short names like fu |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 445 | Avoid variables with short names like fv |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 445 | Avoid variables with short names like fw |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 445 | Avoid variables with short names like fx |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 446 | Avoid variables with short names like p |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 446 | Avoid variables with short names like q |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 446 | Avoid variables with short names like r |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 446 | Avoid variables with short names like u |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 446 | Avoid variables with short names like v |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 446 | Avoid variables with short names like w |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 446 | Avoid variables with short names like x |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 446 | Avoid variables with short names like xm |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 447 | Avoid variables with short names like e |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 659 | Avoid empty if statements |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 660-661 | Avoid empty if statements |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 674 | Avoid using short method names |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 682 | Avoid variables with short names like fx |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 688 | Avoid variables with short names like a |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 688 | Avoid variables with short names like b |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 689 | Avoid variables with short names like c |
3 |
org.openscience.cdk.modeling.forcefield.LineSearch | 691 | Avoid empty if statements |
3 |
org.openscience.cdk.modeling.forcefield.LineSearchForTheWolfeConditions | 14-595 | The class 'LineSearchForTheWolfeConditions' has a Cyclomatic Complexity of 5 (Highest = 12). |
3 |
org.openscience.cdk.modeling.forcefield.LineSearchForTheWolfeConditions | 14-595 | Too many fields |
3 |
org.openscience.cdk.modeling.forcefield.LineSearchForTheWolfeConditions | 17 | Avoid variables with short names like x |
3 |