Testsuite: org.openscience.cdk.modulesuites.MextraTests
Tests run: 42, Failures: 1, Errors: 1, Time elapsed: 3.084 sec
------------- Standard Output ---------------
Found IUPAC Parser test.
EnzymeResidueLocator did not have a TestClass annotation
Fragment#toString does not have a test method
Fragment#getTitle does not have a test method
Fragment#setTitle does not have a test method
Fragment#getFreeValences does not have a test method
Fragment#setFreeValences does not have a test method
Fragment did not have a TestClass annotation
PeriodicTableElement#clone does not have a test method
PeriodicTableElement#getName does not have a test method
PeriodicTableElement#toString does not have a test method
PeriodicTableElement#setName does not have a test method
PeriodicTableElement#configure does not have a test method
PeriodicTableElement#getChemicalSerie does not have a test method
PeriodicTableElement#setChemicalSerie does not have a test method
PeriodicTableElement#getPeriod does not have a test method
PeriodicTableElement#setPeriod does not have a test method
PeriodicTableElement#getGroup does not have a test method
PeriodicTableElement#setGroup does not have a test method
PeriodicTableElement#getPhase does not have a test method
PeriodicTableElement#setPhase does not have a test method
PeriodicTableElement#getCASid does not have a test method
PeriodicTableElement#setCASid does not have a test method
PeriodicTableElement#getVdwRadius does not have a test method
PeriodicTableElement#setVdwRadius does not have a test method
PeriodicTableElement#getPaulingEneg does not have a test method
PeriodicTableElement#setPaulingEneg does not have a test method
PeriodicTableElement did not have a TestClass annotation
Vibration#getLabel does not have a test method
Vibration#addAtomVector does not have a test method
Vibration#getAtomVector does not have a test method
Vibration#getAtomVectorCount does not have a test method
Vibration#getAtomVectors does not have a test method
Vibration#removeAtomVectors does not have a test method
Vibration did not have a TestClass annotation
templates.saturatedhydrocarbons.IsoAlkanes#getIsobutane does not have a test method
templates.saturatedhydrocarbons.IsoAlkanes#getIsopentane does not have a test method
templates.saturatedhydrocarbons.IsoAlkanes#getIsohexane does not have a test method
templates.saturatedhydrocarbons.IsoAlkanes did not have a TestClass annotation
templates.MoleculeFactory#makeAlphaPinene does not have a test method
templates.MoleculeFactory#makeIndole does not have a test method
templates.MoleculeFactory#makePyrrole does not have a test method
templates.MoleculeFactory#loadMolecule does not have a test method
templates.MoleculeFactory#makeAlkane does not have a test method
templates.MoleculeFactory#makeEthylCyclohexane does not have a test method
templates.MoleculeFactory#makeCyclohexene does not have a test method
templates.MoleculeFactory#makeCyclohexane does not have a test method
templates.MoleculeFactory#makeCyclobutane does not have a test method
templates.MoleculeFactory#makeCyclobutadiene does not have a test method
templates.MoleculeFactory#makePropylCycloPropane does not have a test method
templates.MoleculeFactory#makeBiphenyl does not have a test method
templates.MoleculeFactory#makePhenylEthylBenzene does not have a test method
templates.MoleculeFactory#makePhenylAmine does not have a test method
templates.MoleculeFactory#make4x3CondensedRings does not have a test method
templates.MoleculeFactory#makeSpiroRings does not have a test method
templates.MoleculeFactory#makeBicycloRings does not have a test method
templates.MoleculeFactory#makeFusedRings does not have a test method
templates.MoleculeFactory#makeMethylDecaline does not have a test method
templates.MoleculeFactory#makeEthylPropylPhenantren does not have a test method
templates.MoleculeFactory#makeSteran does not have a test method
templates.MoleculeFactory#makeAzulene does not have a test method
templates.MoleculeFactory#makePyrroleAnion does not have a test method
templates.MoleculeFactory#makeImidazole does not have a test method
templates.MoleculeFactory#makePyrazole does not have a test method
templates.MoleculeFactory#make124Triazole does not have a test method
templates.MoleculeFactory#make123Triazole does not have a test method
templates.MoleculeFactory#makeTetrazole does not have a test method
templates.MoleculeFactory#makeOxazole does not have a test method
templates.MoleculeFactory#makeIsoxazole does not have a test method
templates.MoleculeFactory#makeIsothiazole does not have a test method
templates.MoleculeFactory#makeThiadiazole does not have a test method
templates.MoleculeFactory#makeOxadiazole does not have a test method
templates.MoleculeFactory#makePyridine does not have a test method
templates.MoleculeFactory#makePyridineOxide does not have a test method
templates.MoleculeFactory#makePyrimidine does not have a test method
templates.MoleculeFactory#makePyridazine does not have a test method
templates.MoleculeFactory#makeTriazine does not have a test method
templates.MoleculeFactory#makeThiazole does not have a test method
templates.MoleculeFactory#makeSingleRing does not have a test method
templates.MoleculeFactory#makeDiamantane does not have a test method
templates.MoleculeFactory#makeBranchedAliphatic does not have a test method
templates.MoleculeFactory#makeBenzene does not have a test method
templates.MoleculeFactory#makeQuinone does not have a test method
templates.MoleculeFactory#makePiperidine does not have a test method
templates.MoleculeFactory#makeTetrahydropyran does not have a test method
templates.MoleculeFactory#makeAdenine does not have a test method
templates.MoleculeFactory did not have a TestClass annotation
atomtype.MMFF94AtomTypeMatcher#findMatchingAtomType does not have a test method
atomtype.MMFF94AtomTypeMatcher did not have a TestClass annotation
atomtype.MM2AtomTypeMatcher#findMatchingAtomType does not have a test method
atomtype.MM2AtomTypeMatcher did not have a TestClass annotation
io.iterator.IteratingMDLConformerReader#hasNext does not have a test method
io.iterator.IteratingMDLConformerReader#next does not have a test method
io.iterator.IteratingMDLConformerReader#remove does not have a test method
io.iterator.IteratingMDLConformerReader did not have a TestClass annotation
io.inchi.INChIContentProcessorTool#processFormula does not have a test method
io.inchi.INChIContentProcessorTool#processConnections does not have a test method
io.inchi.INChIContentProcessorTool did not have a TestClass annotation
io.inchi.INChIHandler#doctypeDecl does not have a test method
io.inchi.INChIHandler#startDocument does not have a test method
io.inchi.INChIHandler#endDocument does not have a test method
io.inchi.INChIHandler#endElement does not have a test method
io.inchi.INChIHandler#startElement does not have a test method
io.inchi.INChIHandler#characters does not have a test method
io.inchi.INChIHandler#getChemFile does not have a test method
io.inchi.INChIHandler did not have a TestClass annotation
io.ShelXWriter#write does not have a test method
io.ShelXWriter#close does not have a test method
io.ShelXWriter#setWriter does not have a test method
io.ShelXWriter#setWriter does not have a test method
io.ShelXWriter#getFormat does not have a test method
io.ShelXWriter#accepts does not have a test method
io.ShelXWriter did not have a TestClass annotation
io.INChIPlainTextReader#read does not have a test method
io.INChIPlainTextReader#close does not have a test method
io.INChIPlainTextReader#setReader does not have a test method
io.INChIPlainTextReader#setReader does not have a test method
io.INChIPlainTextReader#getFormat does not have a test method
io.INChIPlainTextReader#accepts does not have a test method
io.INChIPlainTextReader did not have a TestClass annotation
io.GamessReader#read does not have a test method
io.GamessReader#close does not have a test method
io.GamessReader#setReader does not have a test method
io.GamessReader#setReader does not have a test method
io.GamessReader#getFormat does not have a test method
io.GamessReader#accepts does not have a test method
io.GamessReader did not have a TestClass annotation
io.ZMatrixReader#read does not have a test method
io.ZMatrixReader#close does not have a test method
io.ZMatrixReader#setReader does not have a test method
io.ZMatrixReader#setReader does not have a test method
io.ZMatrixReader#getFormat does not have a test method
io.ZMatrixReader#accepts does not have a test method
io.ZMatrixReader did not have a TestClass annotation
io.INChIReader#read does not have a test method
io.INChIReader#close does not have a test method
io.INChIReader#setReader does not have a test method
io.INChIReader#setReader does not have a test method
io.INChIReader#getFormat does not have a test method
io.INChIReader#accepts does not have a test method
io.INChIReader did not have a TestClass annotation
io.random.RandomAccessSDFReader#setReader does not have a test method
io.random.RandomAccessSDFReader#setReader does not have a test method
io.random.RandomAccessSDFReader#getFormat does not have a test method
io.random.RandomAccessSDFReader#accepts does not have a test method
io.random.RandomAccessSDFReader#createChemObjectReader does not have a test method
io.random.RandomAccessSDFReader#isRecordEnd does not have a test method
io.random.RandomAccessSDFReader#processContent does not have a test method
io.random.RandomAccessSDFReader did not have a TestClass annotation
io.random.RandomAccessReader#add does not have a test method
io.random.RandomAccessReader#add does not have a test method
io.random.RandomAccessReader#finalize does not have a test method
io.random.RandomAccessReader#toString does not have a test method
io.random.RandomAccessReader#hasNext does not have a test method
io.random.RandomAccessReader#next does not have a test method
io.random.RandomAccessReader#next does not have a test method
io.random.RandomAccessReader#size does not have a test method
io.random.RandomAccessReader#set does not have a test method
io.random.RandomAccessReader#set does not have a test method
io.random.RandomAccessReader#hasPrevious does not have a test method
io.random.RandomAccessReader#nextIndex does not have a test method
io.random.RandomAccessReader#previous does not have a test method
io.random.RandomAccessReader#previous does not have a test method
io.random.RandomAccessReader#previousIndex does not have a test method
io.random.RandomAccessReader#resize does not have a test method
io.random.RandomAccessReader#close does not have a test method
io.random.RandomAccessReader#first does not have a test method
io.random.RandomAccessReader#first does not have a test method
io.random.RandomAccessReader#last does not have a test method
io.random.RandomAccessReader#last does not have a test method
io.random.RandomAccessReader#addChemObjectIOListener does not have a test method
io.random.RandomAccessReader#removeChemObjectIOListener does not have a test method
io.random.RandomAccessReader#createChemObjectReader does not have a test method
io.random.RandomAccessReader#isRecordEnd does not have a test method
io.random.RandomAccessReader#processContent does not have a test method
io.random.RandomAccessReader#readRecord does not have a test method
io.random.RandomAccessReader#readRecord does not have a test method
io.random.RandomAccessReader#readContent does not have a test method
io.random.RandomAccessReader#saveIndex does not have a test method
io.random.RandomAccessReader#loadIndex does not have a test method
io.random.RandomAccessReader#makeIndex does not have a test method
io.random.RandomAccessReader#getIndexFile does not have a test method
io.random.RandomAccessReader#getChemObjectReader does not have a test method
io.random.RandomAccessReader#setChemObjectReader does not have a test method
io.random.RandomAccessReader#getCurrentRecord does not have a test method
io.random.RandomAccessReader#isIndexCreated does not have a test method
io.random.RandomAccessReader#setIndexCreated does not have a test method
io.random.RandomAccessReader did not have a TestClass annotation
io.VASPReader#read does not have a test method
io.VASPReader#close does not have a test method
io.VASPReader#setReader does not have a test method
io.VASPReader#setReader does not have a test method
io.VASPReader#getFormat does not have a test method
io.VASPReader#accepts does not have a test method
io.VASPReader#nextVASPToken does not have a test method
io.VASPReader#nextVASPTokenFollowing does not have a test method
io.VASPReader did not have a TestClass annotation
io.CrystClustWriter#write does not have a test method
io.CrystClustWriter#close does not have a test method
io.CrystClustWriter#setWriter does not have a test method
io.CrystClustWriter#setWriter does not have a test method
io.CrystClustWriter#getFormat does not have a test method
io.CrystClustWriter#accepts does not have a test method
io.CrystClustWriter did not have a TestClass annotation
io.CrystClustReader#read does not have a test method
io.CrystClustReader#close does not have a test method
io.CrystClustReader#setReader does not have a test method
io.CrystClustReader#setReader does not have a test method
io.CrystClustReader#getFormat does not have a test method
io.CrystClustReader#accepts does not have a test method
io.CrystClustReader did not have a TestClass annotation
geometry.surface.Tessellate#doTessellate does not have a test method
geometry.surface.Tessellate#getNumberOfTriangles does not have a test method
geometry.surface.Tessellate#getTessAsTriangles does not have a test method
geometry.surface.Tessellate#getTessAsPoint3ds does not have a test method
geometry.surface.Tessellate did not have a TestClass annotation
geometry.surface.NumericalSurface#calculateSurface does not have a test method
geometry.surface.NumericalSurface#getAllSurfacePoints does not have a test method
geometry.surface.NumericalSurface#getSurfacePoints does not have a test method
geometry.surface.NumericalSurface#getSurfaceArea does not have a test method
geometry.surface.NumericalSurface#getAllSurfaceAreas does not have a test method
geometry.surface.NumericalSurface#getTotalSurfaceArea does not have a test method
geometry.surface.NumericalSurface did not have a TestClass annotation
geometry.surface.NeighborList#getNeighbors does not have a test method
geometry.surface.NeighborList#getNumberOfNeighbors does not have a test method
geometry.surface.NeighborList did not have a TestClass annotation
geometry.alignment.KabschAlignment#getCenterOfMass does not have a test method
geometry.alignment.KabschAlignment#rotateAtomContainer does not have a test method
geometry.AtomTools#add3DCoordinates1 does not have a test method
geometry.AtomTools#rescaleBondLength does not have a test method
geometry.AtomTools#calculate3DCoordinatesForLigands does not have a test method
geometry.AtomTools#calculate3DCoordinates0 does not have a test method
geometry.AtomTools#calculate3DCoordinates1 does not have a test method
geometry.AtomTools#calculate3DCoordinates2 does not have a test method
geometry.AtomTools#calculate3DCoordinates3 does not have a test method
geometry.AtomTools did not have a TestClass annotation
geometry.Projector#project2D does not have a test method
geometry.Projector#project2D does not have a test method
geometry.Projector did not have a TestClass annotation
geometry.RDFCalculator#calculate does not have a test method
geometry.RDFCalculator did not have a TestClass annotation
similarity.DistanceMoment#calculate does not have a test method
similarity.DistanceMoment#generateMoments does not have a test method
similarity.DistanceMoment did not have a TestClass annotation
iupac.parser.NomParserTokenManager#setDebugStream does not have a test method
iupac.parser.NomParserTokenManager#ReInit does not have a test method
iupac.parser.NomParserTokenManager#ReInit does not have a test method
iupac.parser.NomParserTokenManager#SwitchTo does not have a test method
iupac.parser.NomParserTokenManager#jjFillToken does not have a test method
iupac.parser.NomParserTokenManager#getNextToken does not have a test method
iupac.parser.NomParserTokenManager did not have a TestClass annotation
iupac.parser.TokenMgrError#getMessage does not have a test method
iupac.parser.TokenMgrError#addEscapes does not have a test method
iupac.parser.TokenMgrError#LexicalError does not have a test method
iupac.parser.TokenMgrError did not have a TestClass annotation
iupac.parser.AttachedGroup#getName does not have a test method
iupac.parser.AttachedGroup#toString does not have a test method
iupac.parser.AttachedGroup#setName does not have a test method
iupac.parser.AttachedGroup#setLength does not have a test method
iupac.parser.AttachedGroup#getLength does not have a test method
iupac.parser.AttachedGroup#getLocations does not have a test method
iupac.parser.AttachedGroup#setLocations does not have a test method
iupac.parser.AttachedGroup did not have a TestClass annotation
iupac.parser.NomParser#generate does not have a test method
iupac.parser.NomParser#ReInit does not have a test method
iupac.parser.NomParser#ReInit does not have a test method
iupac.parser.NomParser#ReInit does not have a test method
iupac.parser.NomParser#getNextToken does not have a test method
iupac.parser.NomParser#mainChainPrefix does not have a test method
iupac.parser.NomParser#AddHeadToken does not have a test method
iupac.parser.NomParser#MakeMainChainIntoSubstituent does not have a test method
iupac.parser.NomParser#AddFunGroup does not have a test method
iupac.parser.NomParser#AddFunGroupPos does not have a test method
iupac.parser.NomParser#AddUnknownFunGroupPos does not have a test method
iupac.parser.NomParser#AddMainChain does not have a test method
iupac.parser.NomParser#SetMainCyclic does not have a test method
iupac.parser.NomParser#completeChemicalName does not have a test method
iupac.parser.NomParser#prefixConstruct does not have a test method
iupac.parser.NomParser#prefixType does not have a test method
iupac.parser.NomParser#subChain does not have a test method
iupac.parser.NomParser#attachLocationSpecified does not have a test method
iupac.parser.NomParser#oneAttachLocation does not have a test method
iupac.parser.NomParser#twoOrThreeAttachLocations does not have a test method
iupac.parser.NomParser#chainPrefix does not have a test method
iupac.parser.NomParser#specialCase does not have a test method
iupac.parser.NomParser#allBaseNumbers does not have a test method
iupac.parser.NomParser#tensNoUnits does not have a test method
iupac.parser.NomParser#tensWithUnits does not have a test method
iupac.parser.NomParser#functionalGroupPrefix does not have a test method
iupac.parser.NomParser#mainChainConstruct does not have a test method
iupac.parser.NomParser#cycle does not have a test method
iupac.parser.NomParser#bondType does not have a test method
iupac.parser.NomParser#mainChainSuffix does not have a test method
iupac.parser.NomParser#endFunctionalGroups does not have a test method
iupac.parser.NomParser#connectingFunctionalGroupsConstruct does not have a test method
iupac.parser.NomParser#connectingFunctionalGroupSuffix does not have a test method
iupac.parser.NomParser#prefixFunctionalGroups does not have a test method
iupac.parser.NomParser#prioritySubstituentsFunGroups does not have a test method
iupac.parser.NomParser#prioritySubstituents does not have a test method
iupac.parser.NomParser#groupOneMetals does not have a test method
iupac.parser.NomParser#groupTwoMetals does not have a test method
iupac.parser.NomParser#dBlockMetals does not have a test method
iupac.parser.NomParser#pBlockMetals does not have a test method
iupac.parser.NomParser#fBlockMetals does not have a test method
iupac.parser.NomParser#getToken does not have a test method
iupac.parser.NomParser#generateParseException does not have a test method
iupac.parser.NomParser#enable_tracing does not have a test method
iupac.parser.NomParser#disable_tracing does not have a test method
iupac.parser.NomParser did not have a TestClass annotation
iupac.parser.MoleculeBuilder#buildMolecule does not have a test method
iupac.parser.MoleculeBuilder#getMetalAtomicSymbol does not have a test method
iupac.parser.MoleculeBuilder did not have a TestClass annotation
iupac.parser.Token#toString does not have a test method
iupac.parser.Token#newToken does not have a test method
iupac.parser.Token did not have a TestClass annotation
iupac.parser.SimpleCharStream#readChar does not have a test method
iupac.parser.SimpleCharStream#ReInit does not have a test method
iupac.parser.SimpleCharStream#ReInit does not have a test method
iupac.parser.SimpleCharStream#ReInit does not have a test method
iupac.parser.SimpleCharStream#ReInit does not have a test method
iupac.parser.SimpleCharStream#ReInit does not have a test method
iupac.parser.SimpleCharStream#ReInit does not have a test method
iupac.parser.SimpleCharStream#GetImage does not have a test method
iupac.parser.SimpleCharStream#getBeginLine does not have a test method
iupac.parser.SimpleCharStream#getBeginColumn does not have a test method
iupac.parser.SimpleCharStream#getEndLine does not have a test method
iupac.parser.SimpleCharStream#getEndColumn does not have a test method
iupac.parser.SimpleCharStream#BeginToken does not have a test method
iupac.parser.SimpleCharStream#backup does not have a test method
iupac.parser.SimpleCharStream#ExpandBuff does not have a test method
iupac.parser.SimpleCharStream#FillBuff does not have a test method
iupac.parser.SimpleCharStream#UpdateLineColumn does not have a test method
iupac.parser.SimpleCharStream#getColumn does not have a test method
iupac.parser.SimpleCharStream#getLine does not have a test method
iupac.parser.SimpleCharStream#GetSuffix does not have a test method
iupac.parser.SimpleCharStream#Done does not have a test method
iupac.parser.SimpleCharStream#adjustBeginLineColumn does not have a test method
iupac.parser.SimpleCharStream did not have a TestClass annotation
iupac.parser.ParseException#getMessage does not have a test method
iupac.parser.ParseException#add_escapes does not have a test method
iupac.parser.ParseException did not have a TestClass annotation
graph.AtomContainerAtomPermutor#initObjectArray does not have a test method
graph.AtomContainerAtomPermutor#makeResult does not have a test method
graph.AtomContainerAtomPermutor did not have a TestClass annotation
graph.matrix.TopologicalMatrix#getMatrix does not have a test method
graph.matrix.TopologicalMatrix did not have a TestClass annotation
graph.AtomContainerBondPermutor#initObjectArray does not have a test method
graph.AtomContainerBondPermutor#makeResult does not have a test method
graph.AtomContainerBondPermutor did not have a TestClass annotation
graph.AtomContainerPermutor#hasNext does not have a test method
graph.AtomContainerPermutor#next does not have a test method
graph.AtomContainerPermutor#remove does not have a test method
graph.AtomContainerPermutor#swap does not have a test method
graph.AtomContainerPermutor#initObjectArray does not have a test method
graph.AtomContainerPermutor#makeResult does not have a test method
graph.AtomContainerPermutor#setAtomContainer does not have a test method
graph.AtomContainerPermutor#initBookkeeping does not have a test method
graph.AtomContainerPermutor#isOdd does not have a test method
graph.AtomContainerPermutor did not have a TestClass annotation
graph.invariant.HuLuIndexTool#getEAIDNumber does not have a test method
graph.invariant.HuLuIndexTool#getExtendedAdjacenyMatrix does not have a test method
graph.invariant.HuLuIndexTool#getAtomWeights does not have a test method
graph.invariant.HuLuIndexTool#getAtomLayers does not have a test method
graph.invariant.HuLuIndexTool#displayMatrix does not have a test method
graph.invariant.HuLuIndexTool#displayMatrix does not have a test method
graph.invariant.HuLuIndexTool#displayArray does not have a test method
graph.invariant.HuLuIndexTool#displayArray does not have a test method
graph.invariant.HuLuIndexTool did not have a TestClass annotation
graph.invariant.EquivalentClassPartitioner#getTopoEquivClassbyHuXu does not have a test method
graph.invariant.EquivalentClassPartitioner#prepareNode does not have a test method
graph.invariant.EquivalentClassPartitioner#buildNodeMatrix does not have a test method
graph.invariant.EquivalentClassPartitioner#buildTrialNodeMatrix does not have a test method
graph.invariant.EquivalentClassPartitioner#buildBondMatrix does not have a test method
graph.invariant.EquivalentClassPartitioner#buildWeightMatrix does not have a test method
graph.invariant.EquivalentClassPartitioner#checkDiffNumber does not have a test method
graph.invariant.EquivalentClassPartitioner#getEquivalentClass does not have a test method
graph.invariant.EquivalentClassPartitioner#findTopoEquivClass does not have a test method
graph.invariant.EquivalentClassPartitioner did not have a TestClass annotation
graph.invariant.GIMatrix#add does not have a test method
graph.invariant.GIMatrix#equals does not have a test method
graph.invariant.GIMatrix#zero does not have a test method
graph.invariant.GIMatrix#trace does not have a test method
graph.invariant.GIMatrix#multiply does not have a test method
graph.invariant.GIMatrix#multiply does not have a test method
graph.invariant.GIMatrix#width does not have a test method
graph.invariant.GIMatrix#transpose does not have a test method
graph.invariant.GIMatrix#getColumn does not have a test method
graph.invariant.GIMatrix#getLine does not have a test method
graph.invariant.GIMatrix#getValueAt does not have a test method
graph.invariant.GIMatrix#setValueAt does not have a test method
graph.invariant.GIMatrix#getArrayValue does not have a test method
graph.invariant.GIMatrix#height does not have a test method
graph.invariant.GIMatrix#setArrayValue does not have a test method
graph.invariant.GIMatrix#setLine does not have a test method
graph.invariant.GIMatrix#setColumn does not have a test method
graph.invariant.GIMatrix#identity does not have a test method
graph.invariant.GIMatrix#isSquare does not have a test method
graph.invariant.GIMatrix#isSymmetric does not have a test method
graph.invariant.GIMatrix#isAntisymmetric does not have a test method
graph.invariant.GIMatrix#isTriangularSuperior does not have a test method
graph.invariant.GIMatrix#isTriangularInferior does not have a test method
graph.invariant.GIMatrix#isDiagonal does not have a test method
graph.invariant.GIMatrix#isInvertible does not have a test method
graph.invariant.GIMatrix#inverse does not have a test method
graph.invariant.GIMatrix#GaussJordan does not have a test method
graph.invariant.GIMatrix#diagonal does not have a test method
graph.invariant.GIMatrix#multiplyLine does not have a test method
graph.invariant.GIMatrix#invertLine does not have a test method
graph.invariant.GIMatrix#addLine does not have a test method
graph.invariant.GIMatrix#determinant does not have a test method
graph.invariant.GIMatrix did not have a TestClass annotation
ringsearch.FiguerasSSSRFinder#findSSSR does not have a test method
ringsearch.FiguerasSSSRFinder did not have a TestClass annotation
config.ElementPTFactory#getInstance does not have a test method
config.ElementPTFactory#getSize does not have a test method
config.ElementPTFactory#configure does not have a test method
config.ElementPTFactory#getElements does not have a test method
config.ElementPTFactory#getElement does not have a test method
config.ElementPTFactory#isElement does not have a test method
config.ElementPTFactory did not have a TestClass annotation
config.elements.ElementPTReader#readElements does not have a test method
config.elements.ElementPTReader did not have a TestClass annotation
config.elements.ElementPTHandler#getElements does not have a test method
config.elements.ElementPTHandler#startDocument does not have a test method
config.elements.ElementPTHandler#endElement does not have a test method
config.elements.ElementPTHandler#startElement does not have a test method
config.elements.ElementPTHandler#characters does not have a test method
config.elements.ElementPTHandler did not have a TestClass annotation
structgen.RandomGenerator#getMolecule does not have a test method
structgen.RandomGenerator#proposeStructure does not have a test method
structgen.RandomGenerator#acceptStructure does not have a test method
structgen.RandomGenerator#mutate does not have a test method
structgen.RandomGenerator#setMolecule does not have a test method
structgen.RandomGenerator did not have a TestClass annotation
tools.DataFeaturesTool#getSupportedDataFeatures does not have a test method
tools.DataFeaturesTool did not have a TestClass annotation
tools.BremserOneSphereHOSECodePredictor#predict does not have a test method
tools.BremserOneSphereHOSECodePredictor#predictFull does not have a test method
tools.BremserOneSphereHOSECodePredictor#getConfidenceLimit does not have a test method
tools.BremserOneSphereHOSECodePredictor#getBibData does not have a test method
tools.BremserOneSphereHOSECodePredictor did not have a TestClass annotation
tools.HOSECodeAnalyser#getElements does not have a test method
tools.HOSECodeAnalyser did not have a TestClass annotation
tools.GridGenerator#toString does not have a test method
tools.GridGenerator#setDimension does not have a test method
tools.GridGenerator#setDimension does not have a test method
tools.GridGenerator#setDimension does not have a test method
tools.GridGenerator#generateGrid does not have a test method
tools.GridGenerator#initializeGrid does not have a test method
tools.GridGenerator#initializeGrid does not have a test method
tools.GridGenerator#gridToGridArray does not have a test method
tools.GridGenerator#getCoordinatesFromGridPoint does not have a test method
tools.GridGenerator#getCoordinatesFromGridPoint does not have a test method
tools.GridGenerator#getGridPointFrom3dCoordinates does not have a test method
tools.GridGenerator#writeGridInPmeshFormat does not have a test method
tools.GridGenerator#writeGridInPmeshFormat does not have a test method
tools.GridGenerator#getDim does not have a test method
tools.GridGenerator#setDim does not have a test method
tools.GridGenerator#getExtendGrid does not have a test method
tools.GridGenerator#setExtendGrid does not have a test method
tools.GridGenerator#getGrid does not have a test method
tools.GridGenerator#setGrid does not have a test method
tools.GridGenerator#getLatticeConstant does not have a test method
tools.GridGenerator#setLatticeConstant does not have a test method
tools.GridGenerator#getGridArray does not have a test method
tools.GridGenerator#getMaxx does not have a test method
tools.GridGenerator#getMaxy does not have a test method
tools.GridGenerator#getMaxz does not have a test method
tools.GridGenerator#getMinx does not have a test method
tools.GridGenerator#getMiny does not have a test method
tools.GridGenerator#getMinz does not have a test method
tools.GridGenerator did not have a TestClass annotation
tools.AtomTypeTools#assignAtomTypePropertiesToAtom does not have a test method
tools.AtomTypeTools#assignAtomTypePropertiesToAtom does not have a test method
tools.AtomTypeTools did not have a TestClass annotation
tools.FixedSizeStack#pop does not have a test method
tools.FixedSizeStack#push does not have a test method
tools.FixedSizeStack did not have a TestClass annotation
tools.GenerateFragments#generateRingFragments does not have a test method
tools.GenerateFragments#generateMurckoFragments does not have a test method
tools.GenerateFragments#getMurckoFrameworksAsSmileArray does not have a test method
tools.GenerateFragments#getRingFragmentsAsSmileArray does not have a test method
tools.GenerateFragments#getLinkerFragmentsAsSmileArray does not have a test method
tools.GenerateFragments#getMurckoFrameworks does not have a test method
tools.GenerateFragments#getRingFragments does not have a test method
tools.GenerateFragments#getLinkerFragments does not have a test method
tools.GenerateFragments#isSmilesToUpperCase does not have a test method
tools.GenerateFragments#setSmilesToUpperCase does not have a test method
tools.GenerateFragments did not have a TestClass annotation
tools.SwissArmyKnife#getDuration does not have a test method
tools.SwissArmyKnife#getDuration does not have a test method
tools.SwissArmyKnife#printInt2D does not have a test method
tools.SwissArmyKnife#faculty does not have a test method
tools.SwissArmyKnife did not have a TestClass annotation
tools.CDKUtilities#fixSmiles does not have a test method
tools.CDKUtilities#fixNitroGroups2 does not have a test method
tools.CDKUtilities#fixAromaticityForXLogP does not have a test method
tools.CDKUtilities#fixSulphurH does not have a test method
tools.CDKUtilities did not have a TestClass annotation
tools.features.MoleculeFeaturesTool#hasElementSymbols does not have a test method
tools.features.MoleculeFeaturesTool#hasFormalCharges does not have a test method
tools.features.MoleculeFeaturesTool#hasPartialCharges does not have a test method
tools.features.MoleculeFeaturesTool#hasGraphRepresentation does not have a test method
tools.features.MoleculeFeaturesTool did not have a TestClass annotation
validate.DictionaryValidator#validateChemObject does not have a test method
validate.DictionaryValidator did not have a TestClass annotation
validate.CDKValidator#validateChemFile does not have a test method
validate.CDKValidator#validateChemSequence does not have a test method
validate.CDKValidator did not have a TestClass annotation
validate.ValidationReport#addError does not have a test method
validate.ValidationReport#addOK does not have a test method
validate.ValidationReport#addReport does not have a test method
validate.ValidationReport#addWarning does not have a test method
validate.ValidationReport#addCDKError does not have a test method
validate.ValidationReport#getErrorCount does not have a test method
validate.ValidationReport#getWarningCount does not have a test method
validate.ValidationReport#getOKCount does not have a test method
validate.ValidationReport#getCDKErrorCount does not have a test method
validate.ValidationReport#getCount does not have a test method
validate.ValidationReport#getErrors does not have a test method
validate.ValidationReport#getWarnings does not have a test method
validate.ValidationReport#getOKs does not have a test method
validate.ValidationReport#getCDKErrors does not have a test method
validate.ValidationReport did not have a TestClass annotation
validate.ValidatorEngine#validateChemObject does not have a test method
validate.ValidatorEngine#validateAtom does not have a test method
validate.ValidatorEngine#validateAtomContainer does not have a test method
validate.ValidatorEngine#validateAtomType does not have a test method
validate.ValidatorEngine#validateBond does not have a test method
validate.ValidatorEngine#validateChemFile does not have a test method
validate.ValidatorEngine#validateChemModel does not have a test method
validate.ValidatorEngine#validateChemSequence does not have a test method
validate.ValidatorEngine#validateCrystal does not have a test method
validate.ValidatorEngine#validateElectronContainer does not have a test method
validate.ValidatorEngine#validateElement does not have a test method
validate.ValidatorEngine#validateIsotope does not have a test method
validate.ValidatorEngine#validateMolecule does not have a test method
validate.ValidatorEngine#validateReaction does not have a test method
validate.ValidatorEngine#validateMoleculeSet does not have a test method
validate.ValidatorEngine#validateReactionSet does not have a test method
validate.ValidatorEngine#addValidator does not have a test method
validate.ValidatorEngine#removeValidator does not have a test method
validate.ValidatorEngine did not have a TestClass annotation
validate.BasicValidator#validateAtom does not have a test method
validate.BasicValidator#validateBond does not have a test method
validate.BasicValidator#validateIsotope does not have a test method
validate.BasicValidator#validateMolecule does not have a test method
validate.BasicValidator#validateReaction does not have a test method
validate.BasicValidator#validateIsotopeExistence does not have a test method
validate.BasicValidator did not have a TestClass annotation
validate.ValidationTest#setDetails does not have a test method
validate.ValidationTest#getChemObject does not have a test method
validate.ValidationTest#getError does not have a test method
validate.ValidationTest#getDetails does not have a test method
validate.ValidationTest did not have a TestClass annotation
validate.Geometry3DValidator#validateBond does not have a test method
validate.Geometry3DValidator did not have a TestClass annotation
validate.AbstractValidator#validateChemObject does not have a test method
validate.AbstractValidator#validateAtom does not have a test method
validate.AbstractValidator#validateAtomContainer does not have a test method
validate.AbstractValidator#validateAtomType does not have a test method
validate.AbstractValidator#validateBond does not have a test method
validate.AbstractValidator#validateChemFile does not have a test method
validate.AbstractValidator#validateChemModel does not have a test method
validate.AbstractValidator#validateChemSequence does not have a test method
validate.AbstractValidator#validateCrystal does not have a test method
validate.AbstractValidator#validateElectronContainer does not have a test method
validate.AbstractValidator#validateElement does not have a test method
validate.AbstractValidator#validateIsotope does not have a test method
validate.AbstractValidator#validateMolecule does not have a test method
validate.AbstractValidator#validateReaction does not have a test method
validate.AbstractValidator#validateMoleculeSet does not have a test method
validate.AbstractValidator#validateReactionSet does not have a test method
validate.AbstractValidator did not have a TestClass annotation
modeling.forcefield.ForceFieldTools#toDegrees does not have a test method
modeling.forcefield.ForceFieldTools#getCoordinates3xNVector does not have a test method
modeling.forcefield.ForceFieldTools#getPoint3dCoordinates does not have a test method
modeling.forcefield.ForceFieldTools#distanceBetweenTwoAtoms does not have a test method
modeling.forcefield.ForceFieldTools#distanceBetweenTwoAtomsFrom3xNCoordinates does not have a test method
modeling.forcefield.ForceFieldTools#distanceBetweenTwoAtomsFromNCoordinates3d does not have a test method
modeling.forcefield.ForceFieldTools#assignCoordinatesToMolecule does not have a test method
modeling.forcefield.ForceFieldTools#distanceBetweenTwoAtomFromTwo3xNCoordinates does not have a test method
modeling.forcefield.ForceFieldTools#angleBetweenTwoBonds does not have a test method
modeling.forcefield.ForceFieldTools#angleBetweenTwoBondsFrom3xNCoordinates does not have a test method
modeling.forcefield.ForceFieldTools#torsionAngle does not have a test method
modeling.forcefield.ForceFieldTools#torsionAngleFrom3xNCoordinates does not have a test method
modeling.forcefield.ForceFieldTools did not have a TestClass annotation
protein.ProteinPocketFinder#getGrid does not have a test method
protein.ProteinPocketFinder#setGrid does not have a test method
protein.ProteinPocketFinder#getLatticeConstant does not have a test method
protein.ProteinPocketFinder#setLatticeConstant does not have a test method
protein.ProteinPocketFinder#findGridBoundaries does not have a test method
protein.ProteinPocketFinder#createCubicGrid does not have a test method
protein.ProteinPocketFinder#assignProteinToGrid does not have a test method
protein.ProteinPocketFinder#debuggCheckPSPEvent does not have a test method
protein.ProteinPocketFinder#sitefinder does not have a test method
protein.ProteinPocketFinder#clusterPSPPocket does not have a test method
protein.ProteinPocketFinder#diagonalAxisScanXZY does not have a test method
protein.ProteinPocketFinder#diagonalAxisScanYZX does not have a test method
protein.ProteinPocketFinder#diagonalAxisScanYXZ does not have a test method
protein.ProteinPocketFinder#diagonalAxisScanXYZ does not have a test method
protein.ProteinPocketFinder#axisScanX does not have a test method
protein.ProteinPocketFinder#axisScanY does not have a test method
protein.ProteinPocketFinder#axisScanZ does not have a test method
protein.ProteinPocketFinder#assignVdWRadiiToProtein does not have a test method
protein.ProteinPocketFinder#gridToPmesh does not have a test method
protein.ProteinPocketFinder#pspGridToPmesh does not have a test method
protein.ProteinPocketFinder#proteinGridToPmesh does not have a test method
protein.ProteinPocketFinder#writePocketsToPMesh does not have a test method
protein.ProteinPocketFinder#getLinkageRadius does not have a test method
protein.ProteinPocketFinder#setLinkageRadius does not have a test method
protein.ProteinPocketFinder#getMinPSCluster does not have a test method
protein.ProteinPocketFinder#setMinPSCluster does not have a test method
protein.ProteinPocketFinder#getMinPSPocket does not have a test method
protein.ProteinPocketFinder#setMinPSPocket does not have a test method
protein.ProteinPocketFinder#getPocketSize does not have a test method
protein.ProteinPocketFinder#setPocketSize does not have a test method
protein.ProteinPocketFinder#getProtein does not have a test method
protein.ProteinPocketFinder#setProtein does not have a test method
protein.ProteinPocketFinder#getProteinInterior does not have a test method
protein.ProteinPocketFinder#setProteinInterior does not have a test method
protein.ProteinPocketFinder#getRAtom does not have a test method
protein.ProteinPocketFinder#setRAtom does not have a test method
protein.ProteinPocketFinder#getRSolvent does not have a test method
protein.ProteinPocketFinder#setRSolvent does not have a test method
protein.ProteinPocketFinder#getSolvantValue does not have a test method
protein.ProteinPocketFinder#setSolvantValue does not have a test method
protein.ProteinPocketFinder#getVanDerWaalsFile does not have a test method
protein.ProteinPocketFinder#setVanDerWaalsFile does not have a test method
protein.ProteinPocketFinder#getPockets does not have a test method
protein.ProteinPocketFinder#setAtomCheckRadius does not have a test method
protein.ProteinPocketFinder did not have a TestClass annotation
Similarity 1 vs. 2: 0.7586207
Similarity 1 vs. 3: 0.46153846
Similarity 1 vs. 4: 0.5217391
Similarity 2 vs. 3: 0.53571427
Similarity 2 vs. 4: 0.42857143
Similarity 3 vs. 4: 0.8
------------- ---------------- ---------------
Testcase: testCoverage(org.openscience.cdk.coverage.ExtraCoverageTest): FAILED
The extra module is not fully tested! Missing number of method tests: 633 in number of classes: 69
junit.framework.AssertionFailedError: The extra module is not fully tested! Missing number of method tests: 633 in number of classes: 69
at org.openscience.cdk.coverage.CoverageAnnotationTest.runCoverageTest(CoverageAnnotationTest.java:101)
at org.openscience.cdk.coverage.ExtraCoverageTest.testCoverage(ExtraCoverageTest.java:53)
Testcase: testTanimoto1(org.openscience.cdk.similarity.TanimotoTest): Caused an ERROR
expected:<0.40625> but was:<0.39393940567970276>
java.lang.AssertionError: expected:<0.40625> but was:<0.39393940567970276>
at org.openscience.cdk.similarity.TanimotoTest.testTanimoto1(TanimotoTest.java:62)