Testsuite: org.openscience.cdk.modulesuites.MioTests
Tests run: 1064, Failures: 1, Errors: 2, Time elapsed: 25.3 sec
------------- Standard Output ---------------
io.cml.PMPConvention#startDocument does not have a test method
io.cml.PMPConvention#startElement does not have a test method
io.cml.PMPConvention#characterData does not have a test method
io.cml.PMPConvention did not have a TestClass annotation
io.cml.JMOLANIMATIONConvention#startElement does not have a test method
io.cml.JMOLANIMATIONConvention#characterData does not have a test method
io.cml.JMOLANIMATIONConvention#endElement does not have a test method
io.cml.JMOLANIMATIONConvention did not have a TestClass annotation
io.cml.CMLStack#toString does not have a test method
io.cml.CMLStack#length does not have a test method
io.cml.CMLStack#current has a test method annotation 'testCurrent' which is not found in test class: org.openscience.cdk.io.cml.CMLStackTest
io.cml.CMLStack#push has a test method annotation 'testPush_String' which is not found in test class: org.openscience.cdk.io.cml.CMLStackTest
io.cml.CMLStack#pop has a test method annotation 'testPop' which is not found in test class: org.openscience.cdk.io.cml.CMLStackTest
io.cml.CMLStack#endsWith has a test method annotation 'testEndsWith_String_String_String' which is not found in test class: org.openscience.cdk.io.cml.CMLStackTest
io.cml.CMLErrorHandler#error does not have a test method
io.cml.CMLErrorHandler#warning does not have a test method
io.cml.CMLErrorHandler#fatalError does not have a test method
io.cml.CMLErrorHandler did not have a TestClass annotation
io.cml.QSARConvention#startElement does not have a test method
io.cml.QSARConvention#endElement does not have a test method
io.cml.QSARConvention did not have a TestClass annotation
io.cml.PDBConvention#startElement does not have a test method
io.cml.PDBConvention#characterData does not have a test method
io.cml.PDBConvention#endDocument does not have a test method
io.cml.PDBConvention#endElement does not have a test method
io.cml.PDBConvention#storeData does not have a test method
io.cml.PDBConvention#storeAtomData does not have a test method
io.cml.PDBConvention#newSequence does not have a test method
io.cml.PDBConvention did not have a TestClass annotation
io.cml.CMLCoreModule#notify does not have a test method
io.cml.CMLCoreModule#newMolecule does not have a test method
io.cml.CMLCoreModule#startDocument does not have a test method
io.cml.CMLCoreModule#startElement does not have a test method
io.cml.CMLCoreModule#characterData does not have a test method
io.cml.CMLCoreModule#inherit does not have a test method
io.cml.CMLCoreModule#returnChemFile does not have a test method
io.cml.CMLCoreModule#newMoleculeData does not have a test method
io.cml.CMLCoreModule#newFormulaData does not have a test method
io.cml.CMLCoreModule#newAtomData does not have a test method
io.cml.CMLCoreModule#newBondData does not have a test method
io.cml.CMLCoreModule#newCrystalData does not have a test method
io.cml.CMLCoreModule#endDocument does not have a test method
io.cml.CMLCoreModule#endElement does not have a test method
io.cml.CMLCoreModule#storeData does not have a test method
io.cml.CMLCoreModule#storeAtomData does not have a test method
io.cml.CMLCoreModule#storeBondData does not have a test method
io.cml.CMLCoreModule#addArrayElementsTo does not have a test method
io.cml.CMLCoreModule did not have a TestClass annotation
io.cml.CDKConvention#startDocument does not have a test method
io.cml.CDKConvention#startElement does not have a test method
io.cml.CDKConvention#characterData does not have a test method
io.cml.CDKConvention did not have a TestClass annotation
io.cml.CMLHandler#startDocument does not have a test method
io.cml.CMLHandler#startElement does not have a test method
io.cml.CMLHandler#endDocument does not have a test method
io.cml.CMLHandler#endElement does not have a test method
io.cml.CMLHandler#registerConvention does not have a test method
io.cml.CMLHandler#characters does not have a test method
io.cml.CMLHandler#doctypeDecl does not have a test method
io.cml.CMLHandler did not have a TestClass annotation
io.cml.MDLMolConvention#startDocument does not have a test method
io.cml.MDLMolConvention#startElement does not have a test method
io.cml.MDLMolConvention#characterData does not have a test method
io.cml.MDLMolConvention did not have a TestClass annotation
io.cml.CMLReactionModule#startElement does not have a test method
io.cml.CMLReactionModule#endElement does not have a test method
io.cml.CMLReactionModule did not have a TestClass annotation
io.cml.CMLResolver#resolveEntity does not have a test method
io.cml.CMLResolver#resolveEntity does not have a test method
io.cml.CMLResolver#getExternalSubset does not have a test method
io.cml.CMLResolver did not have a TestClass annotation
io.MDLRXNV3000Reader#close does not have a test method
io.MDLRXNV3000Reader#accepts does not have a test method
io.MDLRXNV3000Reader#getIOSettings does not have a test method
io.MDLRXNV3000Reader#setReader does not have a test method
io.MDLRXNV3000Reader#setReader does not have a test method
io.iterator.IteratingMDLReader#hasNext does not have a test method
io.iterator.IteratingMDLReader#next does not have a test method
io.iterator.IteratingMDLReader#remove does not have a test method
io.iterator.IteratingMDLReader#close does not have a test method
io.iterator.IteratingMDLReader#getFormat does not have a test method
io.iterator.IteratingMDLReader#getIOSettings does not have a test method
io.iterator.IteratingMDLReader#customizeJob does not have a test method
io.iterator.IteratingMDLReader#setReader does not have a test method
io.iterator.IteratingMDLReader#setReader does not have a test method
io.iterator.IteratingMDLReader#processIOSettingQuestion does not have a test method
io.iterator.IteratingMDLReader did not have a TestClass annotation
io.iterator.IteratingPCSubstancesXMLReader#hasNext does not have a test method
io.iterator.IteratingPCSubstancesXMLReader#next does not have a test method
io.iterator.IteratingPCSubstancesXMLReader#remove does not have a test method
io.iterator.IteratingPCSubstancesXMLReader#close does not have a test method
io.iterator.IteratingPCSubstancesXMLReader#getFormat does not have a test method
io.iterator.IteratingPCSubstancesXMLReader#setReader does not have a test method
io.iterator.IteratingPCSubstancesXMLReader#setReader does not have a test method
io.iterator.IteratingPCSubstancesXMLReader did not have a TestClass annotation
io.iterator.IteratingPCCompoundXMLReader#hasNext does not have a test method
io.iterator.IteratingPCCompoundXMLReader#next does not have a test method
io.iterator.IteratingPCCompoundXMLReader#remove does not have a test method
io.iterator.IteratingPCCompoundXMLReader#close does not have a test method
io.iterator.IteratingPCCompoundXMLReader#getFormat does not have a test method
io.iterator.IteratingPCCompoundXMLReader#setReader does not have a test method
io.iterator.IteratingPCCompoundXMLReader#setReader does not have a test method
io.iterator.IteratingPCCompoundXMLReader did not have a TestClass annotation
io.iterator.IteratingPCCompoundASNReader#hasNext does not have a test method
io.iterator.IteratingPCCompoundASNReader#next does not have a test method
io.iterator.IteratingPCCompoundASNReader#remove does not have a test method
io.iterator.IteratingPCCompoundASNReader#close does not have a test method
io.iterator.IteratingPCCompoundASNReader#getFormat does not have a test method
io.iterator.IteratingPCCompoundASNReader#setReader does not have a test method
io.iterator.IteratingPCCompoundASNReader#setReader does not have a test method
io.iterator.IteratingPCCompoundASNReader did not have a TestClass annotation
io.iterator.DefaultIteratingChemObjectReader#remove does not have a test method
io.iterator.DefaultIteratingChemObjectReader#accepts does not have a test method
io.iterator.DefaultIteratingChemObjectReader#getIOSettings does not have a test method
io.iterator.DefaultIteratingChemObjectReader#addChemObjectIOListener does not have a test method
io.iterator.DefaultIteratingChemObjectReader#removeChemObjectIOListener does not have a test method
io.iterator.DefaultIteratingChemObjectReader#setReaderMode does not have a test method
io.iterator.DefaultIteratingChemObjectReader#fireIOSettingQuestion does not have a test method
io.iterator.DefaultIteratingChemObjectReader did not have a TestClass annotation
io.iterator.event.DefaultEventChemObjectReader#remove does not have a test method
io.iterator.event.DefaultEventChemObjectReader#accepts does not have a test method
io.iterator.event.DefaultEventChemObjectReader#accepts does not have a test method
io.iterator.event.DefaultEventChemObjectReader#getIOSettings does not have a test method
io.iterator.event.DefaultEventChemObjectReader#addChemObjectIOListener does not have a test method
io.iterator.event.DefaultEventChemObjectReader#removeChemObjectIOListener does not have a test method
io.iterator.event.DefaultEventChemObjectReader#fireIOSettingQuestion does not have a test method
io.iterator.event.DefaultEventChemObjectReader#fireFrameRead does not have a test method
io.iterator.event.DefaultEventChemObjectReader did not have a TestClass annotation
io.iterator.event.EventCMLHandler#getAtomContainer does not have a test method
io.iterator.event.EventCMLHandler#startDocument does not have a test method
io.iterator.event.EventCMLHandler#endDocument does not have a test method
io.iterator.event.EventCMLHandler#setDocumentProperty does not have a test method
io.iterator.event.EventCMLHandler#startObject does not have a test method
io.iterator.event.EventCMLHandler#endObject does not have a test method
io.iterator.event.EventCMLHandler#setObjectProperty does not have a test method
io.iterator.event.EventCMLHandler did not have a TestClass annotation
io.iterator.event.EventCMLReader#close does not have a test method
io.iterator.event.EventCMLReader#process does not have a test method
io.iterator.event.EventCMLReader#getFormat does not have a test method
io.iterator.event.EventCMLReader#getAtomContainer does not have a test method
io.iterator.event.EventCMLReader#setReader does not have a test method
io.iterator.event.EventCMLReader did not have a TestClass annotation
io.DefaultChemObjectWriter#getIOSettings does not have a test method
io.DefaultChemObjectWriter#addChemObjectIOListener does not have a test method
io.DefaultChemObjectWriter#removeChemObjectIOListener does not have a test method
io.DefaultChemObjectWriter#fireIOSettingQuestion does not have a test method
io.DefaultChemObjectWriter did not have a TestClass annotation
io.MDLRXNReader#read does not have a test method
io.MDLRXNReader#close does not have a test method
io.MDLRXNReader#accepts does not have a test method
io.MDLRXNReader#accepts does not have a test method
io.MDLRXNReader#getFormat does not have a test method
io.MDLRXNReader#setReader does not have a test method
io.MDLRXNReader#setReader does not have a test method
io.MDLRXNReader did not have a TestClass annotation
io.XYZReader#read does not have a test method
io.XYZReader#close does not have a test method
io.XYZReader#accepts does not have a test method
io.XYZReader#getFormat does not have a test method
io.XYZReader#setReader does not have a test method
io.XYZReader#setReader does not have a test method
io.XYZReader did not have a TestClass annotation
io.MDLRXNWriter#write does not have a test method
io.MDLRXNWriter#close does not have a test method
io.MDLRXNWriter#setWriter does not have a test method
io.MDLRXNWriter#setWriter does not have a test method
io.MDLRXNWriter#accepts does not have a test method
io.MDLRXNWriter#getFormat does not have a test method
io.MDLRXNWriter#setRdFields does not have a test method
io.MDLRXNWriter did not have a TestClass annotation
io.MDLReader#read does not have a test method
io.MDLReader#close does not have a test method
io.MDLReader#accepts does not have a test method
io.MDLReader#getFormat does not have a test method
io.MDLReader#getIOSettings does not have a test method
io.MDLReader#customizeJob does not have a test method
io.MDLReader#setReader does not have a test method
io.MDLReader#setReader does not have a test method
io.MDLReader did not have a TestClass annotation
io.PCCompoundXMLReader#read does not have a test method
io.PCCompoundXMLReader#close does not have a test method
io.PCCompoundXMLReader#accepts does not have a test method
io.PCCompoundXMLReader#getFormat does not have a test method
io.PCCompoundXMLReader#setReader does not have a test method
io.PCCompoundXMLReader#setReader does not have a test method
io.PCCompoundXMLReader did not have a TestClass annotation
io.CDKSourceCodeWriter#write does not have a test method
io.CDKSourceCodeWriter#close does not have a test method
io.CDKSourceCodeWriter#setWriter does not have a test method
io.CDKSourceCodeWriter#setWriter does not have a test method
io.CDKSourceCodeWriter#accepts does not have a test method
io.CDKSourceCodeWriter#getFormat does not have a test method
io.CDKSourceCodeWriter#getIOSettings does not have a test method
io.CDKSourceCodeWriter#getSupportedDataFeatures does not have a test method
io.CDKSourceCodeWriter#getRequiredDataFeatures does not have a test method
io.CDKSourceCodeWriter#writeMolecule does not have a test method
io.CDKSourceCodeWriter#writeAtomContainer does not have a test method
io.CDKSourceCodeWriter#writeAtom does not have a test method
io.CDKSourceCodeWriter#writeBond does not have a test method
io.CDKSourceCodeWriter did not have a TestClass annotation
io.WriterFactory#createWriter does not have a test method
io.WriterFactory#formatCount does not have a test method
io.WriterFactory#findChemFormats does not have a test method
io.WriterFactory did not have a TestClass annotation
io.MDLWriter#write does not have a test method
io.MDLWriter#close does not have a test method
io.MDLWriter#setWriter does not have a test method
io.MDLWriter#setWriter does not have a test method
io.MDLWriter#accepts does not have a test method
io.MDLWriter#getFormat does not have a test method
io.MDLWriter#writeMolecule does not have a test method
io.MDLWriter#dontWriteAromatic does not have a test method
io.MDLWriter#setSdFields does not have a test method
io.MDLWriter did not have a TestClass annotation
io.PCCompoundASNReader#read does not have a test method
io.PCCompoundASNReader#close does not have a test method
io.PCCompoundASNReader#accepts does not have a test method
io.PCCompoundASNReader#getFormat does not have a test method
io.PCCompoundASNReader#setReader does not have a test method
io.PCCompoundASNReader#setReader does not have a test method
io.PCCompoundASNReader did not have a TestClass annotation
io.Mol2Reader#read does not have a test method
io.Mol2Reader#close does not have a test method
io.Mol2Reader#accepts does not have a test method
io.Mol2Reader#accepts does not have a test method
io.Mol2Reader#getFormat does not have a test method
io.Mol2Reader#setReader does not have a test method
io.Mol2Reader#setReader does not have a test method
io.Mol2Reader did not have a TestClass annotation
io.program.GaussianInputWriter#write does not have a test method
io.program.GaussianInputWriter#close does not have a test method
io.program.GaussianInputWriter#setWriter does not have a test method
io.program.GaussianInputWriter#setWriter does not have a test method
io.program.GaussianInputWriter#accepts does not have a test method
io.program.GaussianInputWriter#getFormat does not have a test method
io.program.GaussianInputWriter#getIOSettings does not have a test method
io.program.GaussianInputWriter#writeMolecule does not have a test method
io.program.GaussianInputWriter did not have a TestClass annotation
io.PDBWriter#write does not have a test method
io.PDBWriter#close does not have a test method
io.PDBWriter#setWriter does not have a test method
io.PDBWriter#setWriter does not have a test method
io.PDBWriter#accepts does not have a test method
io.PDBWriter#getFormat does not have a test method
io.PDBWriter#writeMolecule does not have a test method
io.PDBWriter#writeCrystal does not have a test method
io.PDBWriter did not have a TestClass annotation
io.PCSubstanceXMLReader#read does not have a test method
io.PCSubstanceXMLReader#close does not have a test method
io.PCSubstanceXMLReader#accepts does not have a test method
io.PCSubstanceXMLReader#getFormat does not have a test method
io.PCSubstanceXMLReader#setReader does not have a test method
io.PCSubstanceXMLReader#setReader does not have a test method
io.PCSubstanceXMLReader did not have a TestClass annotation
io.Mol2Writer#write does not have a test method
io.Mol2Writer#close does not have a test method
io.Mol2Writer#setWriter does not have a test method
io.Mol2Writer#setWriter does not have a test method
io.Mol2Writer#accepts does not have a test method
io.Mol2Writer#getFormat does not have a test method
io.Mol2Writer#writeMolecule does not have a test method
io.Mol2Writer did not have a TestClass annotation
io.listener.SwingGUIListener#setLevel does not have a test method
io.listener.SwingGUIListener#frameRead does not have a test method
io.listener.SwingGUIListener#processIOSettingQuestion does not have a test method
io.listener.SwingGUIListener did not have a TestClass annotation
io.listener.TextGUIListener#setLevel does not have a test method
io.listener.TextGUIListener#frameRead does not have a test method
io.listener.TextGUIListener#processIOSettingQuestion does not have a test method
io.listener.TextGUIListener#setOutputWriter does not have a test method
io.listener.TextGUIListener#setInputReader does not have a test method
io.listener.TextGUIListener did not have a TestClass annotation
io.listener.PropertiesListener#frameRead does not have a test method
io.listener.PropertiesListener#processIOSettingQuestion does not have a test method
io.listener.PropertiesListener#setOutputWriter does not have a test method
io.listener.PropertiesListener did not have a TestClass annotation
io.pubchemxml.PubChemXMLHelper#parseSubstance does not have a test method
io.pubchemxml.PubChemXMLHelper#parseMolecule does not have a test method
io.pubchemxml.PubChemXMLHelper#parseCompoundsBlock does not have a test method
io.pubchemxml.PubChemXMLHelper#getSID does not have a test method
io.pubchemxml.PubChemXMLHelper#getCID does not have a test method
io.pubchemxml.PubChemXMLHelper#parseAtomElements does not have a test method
io.pubchemxml.PubChemXMLHelper#parserAtomBlock does not have a test method
io.pubchemxml.PubChemXMLHelper#parserCompoundInfoData does not have a test method
io.pubchemxml.PubChemXMLHelper#parseAtomCharges does not have a test method
io.pubchemxml.PubChemXMLHelper#parserBondBlock does not have a test method
io.pubchemxml.PubChemXMLHelper did not have a TestClass annotation
io.setting.IOSetting#getName does not have a test method
io.setting.IOSetting#getLevel does not have a test method
io.setting.IOSetting#getQuestion does not have a test method
io.setting.IOSetting#getDefaultSetting does not have a test method
io.setting.IOSetting#setSetting does not have a test method
io.setting.IOSetting#getSetting does not have a test method
io.setting.IOSetting did not have a TestClass annotation
io.setting.BooleanIOSetting#isSet does not have a test method
io.setting.BooleanIOSetting#setSetting does not have a test method
io.setting.BooleanIOSetting did not have a TestClass annotation
io.setting.StringIOSetting#setSetting does not have a test method
io.setting.StringIOSetting did not have a TestClass annotation
io.setting.OptionIOSetting#setSetting does not have a test method
io.setting.OptionIOSetting#setSetting does not have a test method
io.setting.OptionIOSetting#getOptions does not have a test method
io.setting.OptionIOSetting did not have a TestClass annotation
io.setting.IntegerIOSetting#setSetting does not have a test method
io.setting.IntegerIOSetting#getSettingValue does not have a test method
io.setting.IntegerIOSetting did not have a TestClass annotation
io.formats.CTXFormat#matches does not have a test method
io.formats.CTXFormat#getSupportedDataFeatures does not have a test method
io.formats.CTXFormat#getRequiredDataFeatures does not have a test method
io.formats.MOPAC2002Format#matches does not have a test method
io.formats.MOPAC2002Format#getSupportedDataFeatures does not have a test method
io.formats.MOPAC2002Format#getRequiredDataFeatures does not have a test method
io.formats.JaguarFormat#matches does not have a test method
io.formats.JaguarFormat#getSupportedDataFeatures does not have a test method
io.formats.JaguarFormat#getRequiredDataFeatures does not have a test method
io.formats.ChemDrawFormat#getSupportedDataFeatures does not have a test method
io.formats.ChemDrawFormat#getRequiredDataFeatures does not have a test method
io.formats.Gaussian94Format#matches does not have a test method
io.formats.Gaussian94Format#getSupportedDataFeatures does not have a test method
io.formats.Gaussian94Format#getRequiredDataFeatures does not have a test method
io.formats.PubChemASNFormat#matches does not have a test method
io.formats.PubChemASNFormat#getSupportedDataFeatures does not have a test method
io.formats.PubChemASNFormat#getRequiredDataFeatures does not have a test method
io.formats.SMILESFormat#getSupportedDataFeatures does not have a test method
io.formats.SMILESFormat#getRequiredDataFeatures does not have a test method
io.formats.BSFormat#getSupportedDataFeatures does not have a test method
io.formats.BSFormat#getRequiredDataFeatures does not have a test method
io.formats.HINFormat#matches does not have a test method
io.formats.HINFormat#getSupportedDataFeatures does not have a test method
io.formats.HINFormat#getRequiredDataFeatures does not have a test method
io.formats.BGFFormat#getSupportedDataFeatures does not have a test method
io.formats.BGFFormat#getRequiredDataFeatures does not have a test method
io.formats.MDLFormat#matches does not have a test method
io.formats.MDLFormat#getSupportedDataFeatures does not have a test method
io.formats.MDLFormat#getRequiredDataFeatures does not have a test method
io.formats.FingerprintFormat#getSupportedDataFeatures does not have a test method
io.formats.FingerprintFormat#getRequiredDataFeatures does not have a test method
io.formats.FingerprintFormat refers to a non-existing test class: org.openscience.cdk.io.formats.FingerprintFormatTest
io.formats.FenskeHall_ZMatrixFormat#getSupportedDataFeatures does not have a test method
io.formats.FenskeHall_ZMatrixFormat#getRequiredDataFeatures does not have a test method
io.formats.INChIPlainTextFormat#matches does not have a test method
io.formats.INChIPlainTextFormat#getSupportedDataFeatures does not have a test method
io.formats.INChIPlainTextFormat#getRequiredDataFeatures does not have a test method
io.formats.VASPFormat#matches does not have a test method
io.formats.VASPFormat#getSupportedDataFeatures does not have a test method
io.formats.VASPFormat#getRequiredDataFeatures does not have a test method
io.formats.PMPFormat#matches does not have a test method
io.formats.PMPFormat#getSupportedDataFeatures does not have a test method
io.formats.PMPFormat#getRequiredDataFeatures does not have a test method
io.formats.SpartanFormat#matches does not have a test method
io.formats.SpartanFormat#getSupportedDataFeatures does not have a test method
io.formats.SpartanFormat#getRequiredDataFeatures does not have a test method
io.formats.JMEFormat#getSupportedDataFeatures does not have a test method
io.formats.JMEFormat#getRequiredDataFeatures does not have a test method
io.formats.POVRayFormat did not have a TestClass annotation
io.formats.ChemtoolFormat#getSupportedDataFeatures does not have a test method
io.formats.ChemtoolFormat#getRequiredDataFeatures does not have a test method
io.formats.Gaussian03Format#matches does not have a test method
io.formats.Gaussian03Format#getSupportedDataFeatures does not have a test method
io.formats.Gaussian03Format#getRequiredDataFeatures does not have a test method
io.formats.CRK3DFormat#getSupportedDataFeatures does not have a test method
io.formats.CRK3DFormat#getRequiredDataFeatures does not have a test method
io.formats.MDLV3000Format#matches does not have a test method
io.formats.MDLV3000Format#getSupportedDataFeatures does not have a test method
io.formats.MDLV3000Format#getRequiredDataFeatures does not have a test method
io.formats.QChemFormat#matches does not have a test method
io.formats.QChemFormat#getSupportedDataFeatures does not have a test method
io.formats.QChemFormat#getRequiredDataFeatures does not have a test method
io.formats.MDLRXNV3000Format#matches does not have a test method
io.formats.MDLRXNV3000Format#getSupportedDataFeatures does not have a test method
io.formats.MDLRXNV3000Format#getRequiredDataFeatures does not have a test method
io.formats.PCModelFormat#getSupportedDataFeatures does not have a test method
io.formats.PCModelFormat#getRequiredDataFeatures does not have a test method
io.formats.CDKSourceCodeFormat#getSupportedDataFeatures does not have a test method
io.formats.CDKSourceCodeFormat#getRequiredDataFeatures does not have a test method
io.formats.CDKSourceCodeFormat refers to a non-existing test class: org.openscience.cdk.io.formats.CDKSourceCodeFormatTest
io.formats.MOPAC7Format#matches does not have a test method
io.formats.MOPAC7Format#getSupportedDataFeatures does not have a test method
io.formats.MOPAC7Format#getRequiredDataFeatures does not have a test method
io.formats.UniChemXYZFormat#getSupportedDataFeatures does not have a test method
io.formats.UniChemXYZFormat#getRequiredDataFeatures does not have a test method
io.formats.Chem3D_Cartesian_1Format#getSupportedDataFeatures does not have a test method
io.formats.Chem3D_Cartesian_1Format#getRequiredDataFeatures does not have a test method
io.formats.Gaussian90Format#matches does not have a test method
io.formats.Gaussian90Format#getSupportedDataFeatures does not have a test method
io.formats.Gaussian90Format#getRequiredDataFeatures does not have a test method
io.formats.MPQCFormat#getSupportedDataFeatures does not have a test method
io.formats.MPQCFormat#getRequiredDataFeatures does not have a test method
io.formats.ADFFormat#matches does not have a test method
io.formats.ADFFormat#getSupportedDataFeatures does not have a test method
io.formats.ADFFormat#getRequiredDataFeatures does not have a test method
io.formats.PQSChemFormat#getSupportedDataFeatures does not have a test method
io.formats.PQSChemFormat#getRequiredDataFeatures does not have a test method
io.formats.GROMOS96Format#getSupportedDataFeatures does not have a test method
io.formats.GROMOS96Format#getRequiredDataFeatures does not have a test method
io.formats.Aces2Format#matches does not have a test method
io.formats.Aces2Format#getSupportedDataFeatures does not have a test method
io.formats.Aces2Format#getRequiredDataFeatures does not have a test method
io.formats.RawCopyFormat#getSupportedDataFeatures does not have a test method
io.formats.RawCopyFormat#getRequiredDataFeatures does not have a test method
io.formats.Chem3D_Cartesian_2Format#getSupportedDataFeatures does not have a test method
io.formats.Chem3D_Cartesian_2Format#getRequiredDataFeatures does not have a test method
io.formats.PubChemCompoundsXMLFormat#matches does not have a test method
io.formats.PubChemCompoundsXMLFormat#getSupportedDataFeatures does not have a test method
io.formats.PubChemCompoundsXMLFormat#getRequiredDataFeatures does not have a test method
io.formats.GhemicalMMFormat#matches does not have a test method
io.formats.GhemicalMMFormat#getSupportedDataFeatures does not have a test method
io.formats.GhemicalMMFormat#getRequiredDataFeatures does not have a test method
io.formats.CRK2DFormat#getSupportedDataFeatures does not have a test method
io.formats.CRK2DFormat#getRequiredDataFeatures does not have a test method
io.formats.CMLFormat#matches does not have a test method
io.formats.CMLFormat#getSupportedDataFeatures does not have a test method
io.formats.CMLFormat#getRequiredDataFeatures does not have a test method
io.formats.TurboMoleFormat#getSupportedDataFeatures does not have a test method
io.formats.TurboMoleFormat#getRequiredDataFeatures does not have a test method
io.formats.PubChemCompoundXMLFormat#matches does not have a test method
io.formats.PubChemCompoundXMLFormat#getSupportedDataFeatures does not have a test method
io.formats.PubChemCompoundXMLFormat#getRequiredDataFeatures does not have a test method
io.formats.SybylDescriptorFormat#getSupportedDataFeatures does not have a test method
io.formats.SybylDescriptorFormat#getRequiredDataFeatures does not have a test method
io.formats.Mol2Format#matches does not have a test method
io.formats.Mol2Format#getSupportedDataFeatures does not have a test method
io.formats.Mol2Format#getRequiredDataFeatures does not have a test method
io.formats.CMLRSSFormat#getSupportedDataFeatures does not have a test method
io.formats.CMLRSSFormat#getRequiredDataFeatures does not have a test method
io.formats.ZindoFormat#getSupportedDataFeatures does not have a test method
io.formats.ZindoFormat#getRequiredDataFeatures does not have a test method
io.formats.DOCK5Format#getSupportedDataFeatures does not have a test method
io.formats.DOCK5Format#getRequiredDataFeatures does not have a test method
io.formats.SMILESFIXFormat#getSupportedDataFeatures does not have a test method
io.formats.SMILESFIXFormat#getRequiredDataFeatures does not have a test method
io.formats.PDBMLFormat#getSupportedDataFeatures does not have a test method
io.formats.PDBMLFormat#getRequiredDataFeatures does not have a test method
io.formats.GamessFormat#matches does not have a test method
io.formats.GamessFormat#getSupportedDataFeatures does not have a test method
io.formats.GamessFormat#getRequiredDataFeatures does not have a test method
io.formats.TinkerXYZFormat#getSupportedDataFeatures does not have a test method
io.formats.TinkerXYZFormat#getRequiredDataFeatures does not have a test method
io.formats.ShelXFormat#matches does not have a test method
io.formats.ShelXFormat#getSupportedDataFeatures does not have a test method
io.formats.ShelXFormat#getRequiredDataFeatures does not have a test method
io.formats.MacroModelFormat#getSupportedDataFeatures does not have a test method
io.formats.MacroModelFormat#getRequiredDataFeatures does not have a test method
io.formats.DMol3Format#getSupportedDataFeatures does not have a test method
io.formats.DMol3Format#getRequiredDataFeatures does not have a test method
io.formats.TinkerMM2Format#getSupportedDataFeatures does not have a test method
io.formats.TinkerMM2Format#getRequiredDataFeatures does not have a test method
io.formats.DaltonFormat#matches does not have a test method
io.formats.DaltonFormat#getSupportedDataFeatures does not have a test method
io.formats.DaltonFormat#getRequiredDataFeatures does not have a test method
io.formats.CrystClustFormat#matches does not have a test method
io.formats.CrystClustFormat#getSupportedDataFeatures does not have a test method
io.formats.CrystClustFormat#getRequiredDataFeatures does not have a test method
io.formats.CrystClustFormat refers to a non-existing test class: org.openscience.cdk.io.formats.CrystalClustFormatTest
io.formats.Gaussian92Format#matches does not have a test method
io.formats.Gaussian92Format#getSupportedDataFeatures does not have a test method
io.formats.Gaussian92Format#getRequiredDataFeatures does not have a test method
io.formats.MDLRXNFormat#matches does not have a test method
io.formats.MDLRXNFormat#getSupportedDataFeatures does not have a test method
io.formats.MDLRXNFormat#getRequiredDataFeatures does not have a test method
io.formats.INChIFormat#matches does not have a test method
io.formats.INChIFormat#getSupportedDataFeatures does not have a test method
io.formats.INChIFormat#getRequiredDataFeatures does not have a test method
io.formats.CacaoInternalFormat#getSupportedDataFeatures does not have a test method
io.formats.CacaoInternalFormat#getRequiredDataFeatures does not have a test method
io.formats.AlchemyFormat#getSupportedDataFeatures does not have a test method
io.formats.AlchemyFormat#getRequiredDataFeatures does not have a test method
io.formats.YasaraFormat#getSupportedDataFeatures does not have a test method
io.formats.YasaraFormat#getRequiredDataFeatures does not have a test method
io.formats.ViewmolFormat#getSupportedDataFeatures does not have a test method
io.formats.ViewmolFormat#getRequiredDataFeatures does not have a test method
io.formats.PubChemSubstancesXMLFormat#matches does not have a test method
io.formats.PubChemSubstancesXMLFormat#getSupportedDataFeatures does not have a test method
io.formats.PubChemSubstancesXMLFormat#getRequiredDataFeatures does not have a test method
io.formats.CacaoCartesianFormat#getSupportedDataFeatures does not have a test method
io.formats.CacaoCartesianFormat#getRequiredDataFeatures does not have a test method
io.formats.MOPAC97Format#matches does not have a test method
io.formats.MOPAC97Format#getSupportedDataFeatures does not have a test method
io.formats.MOPAC97Format#getRequiredDataFeatures does not have a test method
io.formats.MMODFormat#getSupportedDataFeatures does not have a test method
io.formats.MMODFormat#getRequiredDataFeatures does not have a test method
io.formats.PDBFormat#matches does not have a test method
io.formats.PDBFormat#getSupportedDataFeatures does not have a test method
io.formats.PDBFormat#getRequiredDataFeatures does not have a test method
io.formats.GaussianInputFormat#getSupportedDataFeatures does not have a test method
io.formats.GaussianInputFormat#getRequiredDataFeatures does not have a test method
io.formats.GaussianInputFormat refers to a non-existing test class: org.openscience.cdk.io.formats.GaussianInputFormatTest
io.formats.Gaussian95Format#matches does not have a test method
io.formats.Gaussian95Format#getSupportedDataFeatures does not have a test method
io.formats.Gaussian95Format#getRequiredDataFeatures does not have a test method
io.formats.ZMatrixFormat#matches does not have a test method
io.formats.ZMatrixFormat#getSupportedDataFeatures does not have a test method
io.formats.ZMatrixFormat#getRequiredDataFeatures does not have a test method
io.formats.ABINITFormat#matches does not have a test method
io.formats.ABINITFormat#getSupportedDataFeatures does not have a test method
io.formats.ABINITFormat#getRequiredDataFeatures does not have a test method
io.formats.GhemicalSPMFormat#matches does not have a test method
io.formats.GhemicalSPMFormat#getSupportedDataFeatures does not have a test method
io.formats.GhemicalSPMFormat#getRequiredDataFeatures does not have a test method
io.formats.PubChemFormat#getSupportedDataFeatures does not have a test method
io.formats.PubChemFormat#getRequiredDataFeatures does not have a test method
io.formats.SVGFormat did not have a TestClass annotation
io.formats.XYZFormat#getSupportedDataFeatures does not have a test method
io.formats.XYZFormat#getRequiredDataFeatures does not have a test method
io.formats.NWChemFormat#matches does not have a test method
io.formats.NWChemFormat#getSupportedDataFeatures does not have a test method
io.formats.NWChemFormat#getRequiredDataFeatures does not have a test method
io.formats.Gaussian98Format#matches does not have a test method
io.formats.Gaussian98Format#getSupportedDataFeatures does not have a test method
io.formats.Gaussian98Format#getRequiredDataFeatures does not have a test method
io.formats.PubChemSubstanceXMLFormat#matches does not have a test method
io.formats.PubChemSubstanceXMLFormat#getSupportedDataFeatures does not have a test method
io.formats.PubChemSubstanceXMLFormat#getRequiredDataFeatures does not have a test method
io.formats.SDFFormat#matches does not have a test method
io.formats.SDFFormat#getSupportedDataFeatures does not have a test method
io.formats.SDFFormat#getRequiredDataFeatures does not have a test method
io.formats.CIFFormat#matches does not have a test method
io.formats.CIFFormat#getSupportedDataFeatures does not have a test method
io.formats.CIFFormat#getRequiredDataFeatures does not have a test method
io.formats.PubChemSubstancesASNFormat#matches does not have a test method
io.formats.PubChemSubstancesASNFormat#getSupportedDataFeatures does not have a test method
io.formats.PubChemSubstancesASNFormat#getRequiredDataFeatures does not have a test method
io.formats.SMARTSFormat#getSupportedDataFeatures does not have a test method
io.formats.SMARTSFormat#getRequiredDataFeatures does not have a test method
io.formats.CACheFormat#matches does not have a test method
io.formats.CACheFormat#getSupportedDataFeatures does not have a test method
io.formats.CACheFormat#getRequiredDataFeatures does not have a test method
io.formats.MOPAC93Format#matches does not have a test method
io.formats.MOPAC93Format#getSupportedDataFeatures does not have a test method
io.formats.MOPAC93Format#getRequiredDataFeatures does not have a test method
io.formats.MDLV2000Format#matches does not have a test method
io.formats.MDLV2000Format#getSupportedDataFeatures does not have a test method
io.formats.MDLV2000Format#getRequiredDataFeatures does not have a test method
io.formats.XEDFormat#getSupportedDataFeatures does not have a test method
io.formats.XEDFormat#getRequiredDataFeatures does not have a test method
io.MDLV2000Reader#read does not have a test method
io.MDLV2000Reader#close does not have a test method
io.MDLV2000Reader#accepts does not have a test method
io.MDLV2000Reader#getFormat does not have a test method
io.MDLV2000Reader#getIOSettings does not have a test method
io.MDLV2000Reader#customizeJob does not have a test method
io.MDLV2000Reader#setReader does not have a test method
io.MDLV2000Reader#setReader does not have a test method
io.MDLV2000Reader did not have a TestClass annotation
io.XYZWriter#write does not have a test method
io.XYZWriter#close does not have a test method
io.XYZWriter#setWriter does not have a test method
io.XYZWriter#setWriter does not have a test method
io.XYZWriter#accepts does not have a test method
io.XYZWriter#getFormat does not have a test method
io.XYZWriter#writeMolecule does not have a test method
io.XYZWriter did not have a TestClass annotation
io.Gaussian98Reader#read does not have a test method
io.Gaussian98Reader#close does not have a test method
io.Gaussian98Reader#accepts does not have a test method
io.Gaussian98Reader#getFormat does not have a test method
io.Gaussian98Reader#getIOSettings does not have a test method
io.Gaussian98Reader#setReader does not have a test method
io.Gaussian98Reader#setReader does not have a test method
io.Gaussian98Reader did not have a TestClass annotation
io.HINReader#read does not have a test method
io.HINReader#close does not have a test method
io.HINReader#accepts does not have a test method
io.HINReader#getFormat does not have a test method
io.HINReader#setReader does not have a test method
io.HINReader#setReader does not have a test method
io.HINReader did not have a TestClass annotation
io.CMLReader#read does not have a test method
io.CMLReader#close does not have a test method
io.CMLReader#accepts does not have a test method
io.CMLReader#getFormat does not have a test method
io.CMLReader#setReader does not have a test method
io.CMLReader#setReader does not have a test method
io.CMLReader#registerConvention does not have a test method
io.CMLReader did not have a TestClass annotation
io.CIFReader#read does not have a test method
io.CIFReader#close does not have a test method
io.CIFReader#accepts does not have a test method
io.CIFReader#setReader does not have a test method
io.CIFReader#setReader does not have a test method
io.CTXReader#read does not have a test method
io.CTXReader#close does not have a test method
io.CTXReader#accepts does not have a test method
io.CTXReader#getFormat does not have a test method
io.CTXReader#setReader does not have a test method
io.CTXReader#setReader does not have a test method
io.CTXReader did not have a TestClass annotation
io.ShelXReader#read does not have a test method
io.ShelXReader#close does not have a test method
io.ShelXReader#accepts does not have a test method
io.ShelXReader#getFormat does not have a test method
io.ShelXReader#setReader does not have a test method
io.ShelXReader#setReader does not have a test method
io.ShelXReader did not have a TestClass annotation
io.PMPReader#read does not have a test method
io.PMPReader#close does not have a test method
io.PMPReader#accepts does not have a test method
io.PMPReader#getFormat does not have a test method
io.PMPReader#setReader does not have a test method
io.PMPReader#setReader does not have a test method
io.PMPReader did not have a TestClass annotation
io.MDLRXNV2000Reader#read does not have a test method
io.MDLRXNV2000Reader#close does not have a test method
io.MDLRXNV2000Reader#accepts does not have a test method
io.MDLRXNV2000Reader#accepts does not have a test method
io.MDLRXNV2000Reader#getFormat does not have a test method
io.MDLRXNV2000Reader#setReader does not have a test method
io.MDLRXNV2000Reader#setReader does not have a test method
io.MDLRXNV2000Reader did not have a TestClass annotation
io.DefaultChemObjectReader#getIOSettings does not have a test method
io.DefaultChemObjectReader#addChemObjectIOListener does not have a test method
io.DefaultChemObjectReader#removeChemObjectIOListener does not have a test method
io.DefaultChemObjectReader#setReaderMode does not have a test method
io.DefaultChemObjectReader#fireIOSettingQuestion does not have a test method
io.DefaultChemObjectReader#fireFrameRead does not have a test method
io.DefaultChemObjectReader did not have a TestClass annotation
io.ReaderFactory#createReader does not have a test method
io.ReaderFactory#createReader does not have a test method
io.ReaderFactory#createReader does not have a test method
io.ReaderFactory#registerFormat does not have a test method
io.ReaderFactory#guessFormat does not have a test method
io.ReaderFactory#guessFormat does not have a test method
io.ReaderFactory#getFormats does not have a test method
io.ReaderFactory did not have a TestClass annotation
io.GhemicalMMReader#read does not have a test method
io.GhemicalMMReader#close does not have a test method
io.GhemicalMMReader#accepts does not have a test method
io.GhemicalMMReader#getFormat does not have a test method
io.GhemicalMMReader#setReader does not have a test method
io.GhemicalMMReader#setReader does not have a test method
io.GhemicalMMReader did not have a TestClass annotation
io.MDLV3000Reader#readLine does not have a test method
io.MDLV3000Reader#read does not have a test method
io.MDLV3000Reader#close does not have a test method
io.MDLV3000Reader#accepts does not have a test method
io.MDLV3000Reader#accepts does not have a test method
io.MDLV3000Reader#getFormat does not have a test method
io.MDLV3000Reader#getIOSettings does not have a test method
io.MDLV3000Reader#setReader does not have a test method
io.MDLV3000Reader#setReader does not have a test method
io.MDLV3000Reader#readMolecule does not have a test method
io.MDLV3000Reader#readHeader does not have a test method
io.MDLV3000Reader#isReady does not have a test method
io.MDLV3000Reader#readConnectionTable does not have a test method
io.MDLV3000Reader#readAtomBlock does not have a test method
io.MDLV3000Reader#readBondBlock does not have a test method
io.MDLV3000Reader#readSGroup does not have a test method
io.MDLV3000Reader#exhaustStringTokenizer does not have a test method
io.MDLV3000Reader did not have a TestClass annotation
io.Gaussian03Reader#read does not have a test method
io.Gaussian03Reader#close does not have a test method
io.Gaussian03Reader#accepts does not have a test method
io.Gaussian03Reader#getFormat does not have a test method
io.Gaussian03Reader#setReader does not have a test method
io.Gaussian03Reader#setReader does not have a test method
io.Gaussian03Reader did not have a TestClass annotation
io.HINWriter#write does not have a test method
io.HINWriter#close does not have a test method
io.HINWriter#setWriter does not have a test method
io.HINWriter#setWriter does not have a test method
io.HINWriter#accepts does not have a test method
io.HINWriter#getFormat does not have a test method
io.HINWriter did not have a TestClass annotation
geometry.ZMatrixTools#zmatrixToCartesian does not have a test method
geometry.ZMatrixTools did not have a TestClass annotation
HEADER created with the CDK (http://cdk.sf.net/)
CRYST1 1.0001.0002.00090.00090.00090.000
HETATM 1 C MOL 0.100 0.100 0.300
TER
HEADER created with the CDK (http://cdk.sf.net/)
CRYST1 1.0001.0002.00090.00090.00090.000
HETATM 1 C MOL 0.100 0.100 0.600
TER
------------- ---------------- ---------------
------------- Standard Error -----------------
java.lang.StringIndexOutOfBoundsException: String index out of range: 80
at java.lang.String.substring(String.java:1765)
at org.openscience.cdk.io.MDLV2000Reader.readMolecule(MDLV2000Reader.java:474)
at org.openscience.cdk.io.MDLV2000Reader.readChemFile(MDLV2000Reader.java:187)
at org.openscience.cdk.io.MDLV2000Reader.read(MDLV2000Reader.java:154)
at org.openscience.cdk.io.MDLV2000ReaderTest.testHisotopes_Strict(MDLV2000ReaderTest.java:460)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:585)
at org.junit.internal.runners.TestMethodRunner.executeMethodBody(TestMethodRunner.java:99)
at org.junit.internal.runners.TestMethodRunner.runUnprotected(TestMethodRunner.java:81)
at org.junit.internal.runners.BeforeAndAfterRunner.runProtected(BeforeAndAfterRunner.java:34)
at org.junit.internal.runners.TestMethodRunner.runMethod(TestMethodRunner.java:75)
at org.junit.internal.runners.TestMethodRunner.run(TestMethodRunner.java:45)
at org.junit.internal.runners.TestClassMethodsRunner.invokeTestMethod(TestClassMethodsRunner.java:66)
at org.junit.internal.runners.TestClassMethodsRunner.run(TestClassMethodsRunner.java:35)
at org.junit.internal.runners.TestClassRunner$1.runUnprotected(TestClassRunner.java:42)
at org.junit.internal.runners.BeforeAndAfterRunner.runProtected(BeforeAndAfterRunner.java:34)
at org.junit.internal.runners.TestClassRunner.run(TestClassRunner.java:52)
at junit.framework.JUnit4TestAdapter.run(JUnit4TestAdapter.java:32)
at junit.framework.TestSuite.runTest(TestSuite.java:232)
at junit.framework.TestSuite.run(TestSuite.java:227)
at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.run(JUnitTestRunner.java:421)
at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.launch(JUnitTestRunner.java:912)
at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.main(JUnitTestRunner.java:766)
java.lang.StringIndexOutOfBoundsException: String index out of range: 80
at java.lang.String.substring(String.java:1765)
at org.openscience.cdk.io.MDLV2000Reader.readMolecule(MDLV2000Reader.java:474)
at org.openscience.cdk.io.MDLV2000Reader.readChemFile(MDLV2000Reader.java:187)
at org.openscience.cdk.io.MDLV2000Reader.read(MDLV2000Reader.java:154)
at org.openscience.cdk.io.MDLV2000ReaderTest.testHisotopes_Relaxed(MDLV2000ReaderTest.java:475)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:585)
at org.junit.internal.runners.TestMethodRunner.executeMethodBody(TestMethodRunner.java:99)
at org.junit.internal.runners.TestMethodRunner.runUnprotected(TestMethodRunner.java:81)
at org.junit.internal.runners.BeforeAndAfterRunner.runProtected(BeforeAndAfterRunner.java:34)
at org.junit.internal.runners.TestMethodRunner.runMethod(TestMethodRunner.java:75)
at org.junit.internal.runners.TestMethodRunner.run(TestMethodRunner.java:45)
at org.junit.internal.runners.TestClassMethodsRunner.invokeTestMethod(TestClassMethodsRunner.java:66)
at org.junit.internal.runners.TestClassMethodsRunner.run(TestClassMethodsRunner.java:35)
at org.junit.internal.runners.TestClassRunner$1.runUnprotected(TestClassRunner.java:42)
at org.junit.internal.runners.BeforeAndAfterRunner.runProtected(BeforeAndAfterRunner.java:34)
at org.junit.internal.runners.TestClassRunner.run(TestClassRunner.java:52)
at junit.framework.JUnit4TestAdapter.run(JUnit4TestAdapter.java:32)
at junit.framework.TestSuite.runTest(TestSuite.java:232)
at junit.framework.TestSuite.run(TestSuite.java:227)
at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.run(JUnitTestRunner.java:421)
at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.launch(JUnitTestRunner.java:912)
at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.main(JUnitTestRunner.java:766)
[Fatal Error] :-1:-1: Premature end of file.
------------- ---------------- ---------------
Testcase: testCoverage(org.openscience.cdk.coverage.IoCoverageTest): FAILED
The io module is not fully tested! Missing number of method tests: 709 in number of classes: 152
junit.framework.AssertionFailedError: The io module is not fully tested! Missing number of method tests: 709 in number of classes: 152
at org.openscience.cdk.coverage.CoverageAnnotationTest.runCoverageTest(CoverageAnnotationTest.java:101)
at org.openscience.cdk.coverage.IoCoverageTest.testCoverage(IoCoverageTest.java:54)
Testcase: testHisotopes_Relaxed(org.openscience.cdk.io.MDLV2000ReaderTest): Caused an ERROR
Error while parsing line 5: 2.5369 -0.1550 0.0000 O 0 0 ??0 ??0 ??0 ??0 ??0 ??0 ??0 ??0 ??0 ??0 -> String index out of range: 80
org.openscience.cdk.exception.CDKException: Error while parsing line 5: 2.5369 -0.1550 0.0000 O 0 0 ??0 ??0 ??0 ??0 ??0 ??0 ??0 ??0 ??0 ??0 -> String index out of range: 80
at org.openscience.cdk.io.MDLV2000Reader.readMolecule(MDLV2000Reader.java:685)
at org.openscience.cdk.io.MDLV2000Reader.readChemFile(MDLV2000Reader.java:187)
at org.openscience.cdk.io.MDLV2000Reader.read(MDLV2000Reader.java:154)
at org.openscience.cdk.io.MDLV2000ReaderTest.testHisotopes_Relaxed(MDLV2000ReaderTest.java:475)
Caused by: java.lang.StringIndexOutOfBoundsException: String index out of range: 80
at java.lang.String.substring(String.java:1765)
at org.openscience.cdk.io.MDLV2000Reader.readMolecule(MDLV2000Reader.java:474)
Testcase: testCML(org.openscience.cdk.io.ReaderFactoryTest): Caused an ERROR
Resetting to invalid mark
java.io.IOException: Resetting to invalid mark
at java.io.BufferedInputStream.reset(BufferedInputStream.java:408)
at org.openscience.cdk.io.ReaderFactory.createReader(ReaderFactory.java:270)
at org.openscience.cdk.io.ReaderFactoryTest.expectReader(ReaderFactoryTest.java:235)
at org.openscience.cdk.io.ReaderFactoryTest.testCML(ReaderFactoryTest.java:147)