Testsuite: org.openscience.cdk.modulesuites.MqsarTests
 Tests run: 3, Failures: 1, Errors: 0, Time elapsed: 0.224 sec
 
 ------------- Standard Output ---------------
 qsar.descriptors.atompair.PiContactDetectionDescriptor#calculate does not have a test method
 qsar.descriptors.atompair.PiContactDetectionDescriptor#getSpecification does not have a test method
 qsar.descriptors.atompair.PiContactDetectionDescriptor#getParameterNames does not have a test method
 qsar.descriptors.atompair.PiContactDetectionDescriptor#getParameterType does not have a test method
 qsar.descriptors.atompair.PiContactDetectionDescriptor#setParameters does not have a test method
 qsar.descriptors.atompair.PiContactDetectionDescriptor#getParameters does not have a test method
 qsar.descriptors.atompair.PiContactDetectionDescriptor did not have a TestClass annotation
 qsar.model.R.CNNRegressionModel#setParameters does not have a test method
 qsar.model.R.CNNRegressionModel#build does not have a test method
 qsar.model.R.CNNRegressionModel#predict does not have a test method
 qsar.model.R.CNNRegressionModel#summary does not have a test method
 qsar.model.R.CNNRegressionModel#loadModel does not have a test method
 qsar.model.R.CNNRegressionModel#loadModel does not have a test method
 qsar.model.R.CNNRegressionModel#getFitValue does not have a test method
 qsar.model.R.CNNRegressionModel#getFitWeights does not have a test method
 qsar.model.R.CNNRegressionModel#getFitFitted does not have a test method
 qsar.model.R.CNNRegressionModel#getFitResiduals does not have a test method
 qsar.model.R.CNNRegressionModel#getFitHessian does not have a test method
 qsar.model.R.CNNRegressionModel#getPredictPredicted does not have a test method
 qsar.model.R.CNNRegressionModel did not have a TestClass annotation
 qsar.model.R.LinearRegressionModelFit#getFitted does not have a test method
 qsar.model.R.LinearRegressionModelFit#getResiduals does not have a test method
 qsar.model.R.LinearRegressionModelFit#getRank does not have a test method
 qsar.model.R.LinearRegressionModelFit#setRank does not have a test method
 qsar.model.R.LinearRegressionModelFit#setResiduals does not have a test method
 qsar.model.R.LinearRegressionModelFit#getCoefficients does not have a test method
 qsar.model.R.LinearRegressionModelFit#setCoefficients does not have a test method
 qsar.model.R.LinearRegressionModelFit#getdfResidual does not have a test method
 qsar.model.R.LinearRegressionModelFit#setdfResidual does not have a test method
 qsar.model.R.LinearRegressionModelFit#setFitted does not have a test method
 qsar.model.R.LinearRegressionModelFit did not have a TestClass annotation
 qsar.model.R.CNNRegressionModelPredict#getPredicted does not have a test method
 qsar.model.R.CNNRegressionModelPredict#setPredicted does not have a test method
 qsar.model.R.CNNRegressionModelPredict did not have a TestClass annotation
 qsar.model.R.LinearRegressionModelPredict#getPredicted does not have a test method
 qsar.model.R.LinearRegressionModelPredict#setPredicted does not have a test method
 qsar.model.R.LinearRegressionModelPredict#getDF does not have a test method
 qsar.model.R.LinearRegressionModelPredict#setDF does not have a test method
 qsar.model.R.LinearRegressionModelPredict#getResidualScale does not have a test method
 qsar.model.R.LinearRegressionModelPredict#setResidualScale does not have a test method
 qsar.model.R.LinearRegressionModelPredict#getLower does not have a test method
 qsar.model.R.LinearRegressionModelPredict#setLower does not have a test method
 qsar.model.R.LinearRegressionModelPredict#getUpper does not have a test method
 qsar.model.R.LinearRegressionModelPredict#setUpper does not have a test method
 qsar.model.R.LinearRegressionModelPredict#getSEFit does not have a test method
 qsar.model.R.LinearRegressionModelPredict#setSEFit does not have a test method
 qsar.model.R.LinearRegressionModelPredict did not have a TestClass annotation
 qsar.model.R.CNNClassificationModel#setParameters does not have a test method
 qsar.model.R.CNNClassificationModel#build does not have a test method
 qsar.model.R.CNNClassificationModel#predict does not have a test method
 qsar.model.R.CNNClassificationModel#loadModel does not have a test method
 qsar.model.R.CNNClassificationModel#loadModel does not have a test method
 qsar.model.R.CNNClassificationModel#getFitValue does not have a test method
 qsar.model.R.CNNClassificationModel#getFitWeights does not have a test method
 qsar.model.R.CNNClassificationModel#getFitFitted does not have a test method
 qsar.model.R.CNNClassificationModel#getFitResiduals does not have a test method
 qsar.model.R.CNNClassificationModel#getFitHessian does not have a test method
 qsar.model.R.CNNClassificationModel#getPredictPredictedRaw does not have a test method
 qsar.model.R.CNNClassificationModel#getPredictPredictedClass does not have a test method
 qsar.model.R.CNNClassificationModel did not have a TestClass annotation
 qsar.model.R.LinearRegressionModelSummary#getResiduals does not have a test method
 qsar.model.R.LinearRegressionModelSummary#getCoeff does not have a test method
 qsar.model.R.LinearRegressionModelSummary#getRSQ does not have a test method
 qsar.model.R.LinearRegressionModelSummary#getAdjRSQ does not have a test method
 qsar.model.R.LinearRegressionModelSummary#getSigma does not have a test method
 qsar.model.R.LinearRegressionModelSummary#getFStatistic does not have a test method
 qsar.model.R.LinearRegressionModelSummary#getFStatisticDF does not have a test method
 qsar.model.R.LinearRegressionModelSummary did not have a TestClass annotation
 qsar.model.R.PLSRegressionModelPredict#getPredictions does not have a test method
 qsar.model.R.PLSRegressionModelPredict did not have a TestClass annotation
 qsar.model.R.CNNRegressionModelSummary#getValue does not have a test method
 qsar.model.R.CNNRegressionModelSummary#getResiduals does not have a test method
 qsar.model.R.CNNRegressionModelSummary#getNumNeurons does not have a test method
 qsar.model.R.CNNRegressionModelSummary#getSoftmax does not have a test method
 qsar.model.R.CNNRegressionModelSummary#getEntropy does not have a test method
 qsar.model.R.CNNRegressionModelSummary#getCensored does not have a test method
 qsar.model.R.CNNRegressionModelSummary did not have a TestClass annotation
 qsar.model.R.PLSRegressionModelFit#getMethod does not have a test method
 qsar.model.R.PLSRegressionModelFit#setTrainingData does not have a test method
 qsar.model.R.PLSRegressionModelFit#setValidationData does not have a test method
 qsar.model.R.PLSRegressionModelFit#wasValidated does not have a test method
 qsar.model.R.PLSRegressionModelFit#getNComp does not have a test method
 qsar.model.R.PLSRegressionModelFit#getB does not have a test method
 qsar.model.R.PLSRegressionModelFit#getTrainingYPred does not have a test method
 qsar.model.R.PLSRegressionModelFit#getTrainingRMS does not have a test method
 qsar.model.R.PLSRegressionModelFit#getXScores does not have a test method
 qsar.model.R.PLSRegressionModelFit#getYScores does not have a test method
 qsar.model.R.PLSRegressionModelFit#getXLoading does not have a test method
 qsar.model.R.PLSRegressionModelFit#getYLoading does not have a test method
 qsar.model.R.PLSRegressionModelFit#getValidationYPred does not have a test method
 qsar.model.R.PLSRegressionModelFit#getValidationRMS does not have a test method
 qsar.model.R.PLSRegressionModelFit#getValidationRMSSD does not have a test method
 qsar.model.R.PLSRegressionModelFit#getValidationR2 does not have a test method
 qsar.model.R.PLSRegressionModelFit#getValidationLV does not have a test method
 qsar.model.R.PLSRegressionModelFit#getValidationIter does not have a test method
 qsar.model.R.PLSRegressionModelFit did not have a TestClass annotation
 qsar.model.R.LinearRegressionModel#finalize does not have a test method
 qsar.model.R.LinearRegressionModel#setParameters does not have a test method
 qsar.model.R.LinearRegressionModel#build does not have a test method
 qsar.model.R.LinearRegressionModel#predict does not have a test method
 qsar.model.R.LinearRegressionModel#summary does not have a test method
 qsar.model.R.LinearRegressionModel#loadModel does not have a test method
 qsar.model.R.LinearRegressionModel#loadModel does not have a test method
 qsar.model.R.LinearRegressionModel#getFitFitted does not have a test method
 qsar.model.R.LinearRegressionModel#getFitResiduals does not have a test method
 qsar.model.R.LinearRegressionModel#getPredictPredicted does not have a test method
 qsar.model.R.LinearRegressionModel#getFitRank does not have a test method
 qsar.model.R.LinearRegressionModel#getFitCoefficients does not have a test method
 qsar.model.R.LinearRegressionModel#getFitDFResidual does not have a test method
 qsar.model.R.LinearRegressionModel#getPredictDF does not have a test method
 qsar.model.R.LinearRegressionModel#getPredictResidualScale does not have a test method
 qsar.model.R.LinearRegressionModel#getPredictLowerBound does not have a test method
 qsar.model.R.LinearRegressionModel#getPredictUpperBound does not have a test method
 qsar.model.R.LinearRegressionModel#getPredictSEPredictions does not have a test method
 qsar.model.R.LinearRegressionModel did not have a TestClass annotation
 qsar.model.R.CNNClassificationModelPredict#getPredictedRaw does not have a test method
 qsar.model.R.CNNClassificationModelPredict#getPredictedClass does not have a test method
 qsar.model.R.CNNClassificationModelPredict#setPredictedRaw does not have a test method
 qsar.model.R.CNNClassificationModelPredict did not have a TestClass annotation
 qsar.model.R.RModel#setParameters does not have a test method
 qsar.model.R.RModel#build does not have a test method
 qsar.model.R.RModel#predict does not have a test method
 qsar.model.R.RModel#loadModel does not have a test method
 qsar.model.R.RModel#loadModel does not have a test method
 qsar.model.R.RModel#setModelName does not have a test method
 qsar.model.R.RModel#getModelName does not have a test method
 qsar.model.R.RModel#saveModel does not have a test method
 qsar.model.R.RModel did not have a TestClass annotation
 qsar.model.R.PLSRegressionModel#finalize does not have a test method
 qsar.model.R.PLSRegressionModel#setParameters does not have a test method
 qsar.model.R.PLSRegressionModel#build does not have a test method
 qsar.model.R.PLSRegressionModel#predict does not have a test method
 qsar.model.R.PLSRegressionModel#loadModel does not have a test method
 qsar.model.R.PLSRegressionModel#loadModel does not have a test method
 qsar.model.R.PLSRegressionModel#getPredictPredicted does not have a test method
 qsar.model.R.PLSRegressionModel#getValidationYPred does not have a test method
 qsar.model.R.PLSRegressionModel#getValidationRMS does not have a test method
 qsar.model.R.PLSRegressionModel#getValidationR2 does not have a test method
 qsar.model.R.PLSRegressionModel#getValidationLV does not have a test method
 qsar.model.R.PLSRegressionModel#getValidationIter does not have a test method
 qsar.model.R.PLSRegressionModel#getFitMethod does not have a test method
 qsar.model.R.PLSRegressionModel#getFitNComp does not have a test method
 qsar.model.R.PLSRegressionModel#getFitB does not have a test method
 qsar.model.R.PLSRegressionModel#getFitRMS does not have a test method
 qsar.model.R.PLSRegressionModel#getFitYPred does not have a test method
 qsar.model.R.PLSRegressionModel#getFitXLoading does not have a test method
 qsar.model.R.PLSRegressionModel#getFitYLoading does not have a test method
 qsar.model.R.PLSRegressionModel#getFitXScores does not have a test method
 qsar.model.R.PLSRegressionModel#getFitYScores does not have a test method
 qsar.model.R.PLSRegressionModel#getFitWasValidated does not have a test method
 qsar.model.R.PLSRegressionModel#getValidationRMSsd does not have a test method
 qsar.model.R.PLSRegressionModel did not have a TestClass annotation
 qsar.model.R.CNNRegressionModelFit#getValue does not have a test method
 qsar.model.R.CNNRegressionModelFit#setValue does not have a test method
 qsar.model.R.CNNRegressionModelFit#getWeights does not have a test method
 qsar.model.R.CNNRegressionModelFit#getFitted does not have a test method
 qsar.model.R.CNNRegressionModelFit#getResiduals does not have a test method
 qsar.model.R.CNNRegressionModelFit#getHessian does not have a test method
 qsar.model.R.CNNRegressionModelFit#setResiduals does not have a test method
 qsar.model.R.CNNRegressionModelFit#setFitted does not have a test method
 qsar.model.R.CNNRegressionModelFit#setHessian does not have a test method
 qsar.model.R.CNNRegressionModelFit#setWeights does not have a test method
 qsar.model.R.CNNRegressionModelFit did not have a TestClass annotation
 qsar.model.R.CNNClassificationModelFit#getValue does not have a test method
 qsar.model.R.CNNClassificationModelFit#setValue does not have a test method
 qsar.model.R.CNNClassificationModelFit#getWeights does not have a test method
 qsar.model.R.CNNClassificationModelFit#getFitted does not have a test method
 qsar.model.R.CNNClassificationModelFit#getResiduals does not have a test method
 qsar.model.R.CNNClassificationModelFit#getHessian does not have a test method
 qsar.model.R.CNNClassificationModelFit#setResiduals does not have a test method
 qsar.model.R.CNNClassificationModelFit#setFitted does not have a test method
 qsar.model.R.CNNClassificationModelFit#setHessian does not have a test method
 qsar.model.R.CNNClassificationModelFit#setWeights does not have a test method
 qsar.model.R.CNNClassificationModelFit did not have a TestClass annotation
 qsar.model.R2.CNNRegressionModel#getValue does not have a test method
 qsar.model.R2.CNNRegressionModel#setParameters does not have a test method
 qsar.model.R2.CNNRegressionModel#build does not have a test method
 qsar.model.R2.CNNRegressionModel#predict does not have a test method
 qsar.model.R2.CNNRegressionModel#summary does not have a test method
 qsar.model.R2.CNNRegressionModel#loadModel does not have a test method
 qsar.model.R2.CNNRegressionModel#loadModel does not have a test method
 qsar.model.R2.CNNRegressionModel#getResiduals does not have a test method
 qsar.model.R2.CNNRegressionModel#getSoftmax does not have a test method
 qsar.model.R2.CNNRegressionModel#getEntropy does not have a test method
 qsar.model.R2.CNNRegressionModel#getCensored does not have a test method
 qsar.model.R2.CNNRegressionModel#getPredictions does not have a test method
 qsar.model.R2.CNNRegressionModel#getConn does not have a test method
 qsar.model.R2.CNNRegressionModel#getDecay does not have a test method
 qsar.model.R2.CNNRegressionModel#getFittedValues does not have a test method
 qsar.model.R2.CNNRegressionModel#getN does not have a test method
 qsar.model.R2.CNNRegressionModel#getNconn does not have a test method
 qsar.model.R2.CNNRegressionModel#getNsunits does not have a test method
 qsar.model.R2.CNNRegressionModel#getNunits does not have a test method
 qsar.model.R2.CNNRegressionModel#getWts does not have a test method
 qsar.model.R2.CNNRegressionModel did not have a TestClass annotation
 qsar.model.R2.LinearRegressionModel#setParameters does not have a test method
 qsar.model.R2.LinearRegressionModel#build does not have a test method
 qsar.model.R2.LinearRegressionModel#predict does not have a test method
 qsar.model.R2.LinearRegressionModel#summary does not have a test method
 qsar.model.R2.LinearRegressionModel#loadModel does not have a test method
 qsar.model.R2.LinearRegressionModel#loadModel does not have a test method
 qsar.model.R2.LinearRegressionModel#getResiduals does not have a test method
 qsar.model.R2.LinearRegressionModel#getRank does not have a test method
 qsar.model.R2.LinearRegressionModel#getCoefficients does not have a test method
 qsar.model.R2.LinearRegressionModel#getFittedValues does not have a test method
 qsar.model.R2.LinearRegressionModel#getModelPredict does not have a test method
 qsar.model.R2.LinearRegressionModel#getAssign does not have a test method
 qsar.model.R2.LinearRegressionModel#getDfResidual does not have a test method
 qsar.model.R2.LinearRegressionModel#getEffects does not have a test method
 qsar.model.R2.LinearRegressionModel#getModel does not have a test method
 qsar.model.R2.LinearRegressionModel#getQr does not have a test method
 qsar.model.R2.LinearRegressionModel#getXlevels does not have a test method
 qsar.model.R2.LinearRegressionModel did not have a TestClass annotation
 qsar.model.R2.RModel#finalize does not have a test method
 qsar.model.R2.RModel#setParameters does not have a test method
 qsar.model.R2.RModel#build does not have a test method
 qsar.model.R2.RModel#predict does not have a test method
 qsar.model.R2.RModel#loadModel does not have a test method
 qsar.model.R2.RModel#loadModel does not have a test method
 qsar.model.R2.RModel#setModelName does not have a test method
 qsar.model.R2.RModel#getModelName does not have a test method
 qsar.model.R2.RModel#saveModel does not have a test method
 qsar.model.R2.RModel#loadParametersIntoRSession does not have a test method
 qsar.model.R2.RModel#isOfClass does not have a test method
 qsar.model.R2.RModel#removeObject does not have a test method
 qsar.model.R2.RModel#getRengine does not have a test method
 qsar.model.R2.RModel#getModelObject does not have a test method
 qsar.model.R2.RModel#getUniqueVariableName does not have a test method
 qsar.model.R2.RModel did not have a TestClass annotation
 qsar.AbstractBondDescriptor#isCachedAtomContainer does not have a test method
 qsar.AbstractBondDescriptor#getCachedDescriptorValue does not have a test method
 qsar.AbstractBondDescriptor#cacheDescriptorValue does not have a test method
 qsar.AbstractBondDescriptor did not have a TestClass annotation
 qsar.AbstractAtomicDescriptor#isCachedAtomContainer does not have a test method
 qsar.AbstractAtomicDescriptor#getCachedDescriptorValue does not have a test method
 qsar.AbstractAtomicDescriptor#cacheDescriptorValue does not have a test method
 qsar.AbstractAtomicDescriptor did not have a TestClass annotation
 tools.AtomicProperties#getInstance does not have a test method
 tools.AtomicProperties#getVdWVolume does not have a test method
 tools.AtomicProperties#getNormalizedVdWVolume does not have a test method
 tools.AtomicProperties#getElectronegativity does not have a test method
 tools.AtomicProperties#getNormalizedElectronegativity does not have a test method
 tools.AtomicProperties#getPolarizability does not have a test method
 tools.AtomicProperties#getNormalizedPolarizability does not have a test method
 tools.AtomicProperties#getMass does not have a test method
 tools.AtomicProperties#getNormalizedMass does not have a test method
 tools.AtomicProperties did not have a TestClass annotation
 ------------- ---------------- ---------------
 Testcase: testCoverage(org.openscience.cdk.coverage.QsarCoverageTest):	FAILED
 The qsar module is not fully tested! Missing number of method tests: 248 in number of classes: 22
 junit.framework.AssertionFailedError: The qsar module is not fully tested! Missing number of method tests: 248 in number of classes: 22
 	at org.openscience.cdk.coverage.CoverageAnnotationTest.runCoverageTest(CoverageAnnotationTest.java:101)
 	at org.openscience.cdk.coverage.QsarCoverageTest.testCoverage(QsarCoverageTest.java:54)